Variant report

Variant	rs11070104
Chromosome Location	chr13:95644382-95644383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1925867	1.00[AFR][1000 genomes]
rs1925869	1.00[AFR][1000 genomes]
rs1925873	0.91[AFR][1000 genomes]
rs1925881	0.87[AFR][1000 genomes]
rs1925882	0.91[AFR][1000 genomes]
rs4396407	1.00[AFR][1000 genomes]
rs4773834	0.82[AFR][1000 genomes]
rs4773835	0.91[AFR][1000 genomes]
rs7981129	0.91[AFR][1000 genomes]
rs7981212	1.00[AFR][1000 genomes]
rs7997626	0.82[AFR][1000 genomes]
rs9302034	1.00[AFR][1000 genomes]
rs9561755	1.00[AFR][1000 genomes]
rs9561756	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95637600-95645200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:95638000-95644800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:95641000-95644400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:95641400-95644600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:95641400-95646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:95643800-95647600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:95644000-95646600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:95644200-95645400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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