Variant report

Variant	rs1925873
Chromosome Location	chr13:95636265-95636266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11070104	0.91[AFR][1000 genomes]
rs1925853	1.00[EUR][1000 genomes]
rs1925867	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1925869	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1925881	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1925882	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3864995	1.00[EUR][1000 genomes]
rs4148555	1.00[EUR][1000 genomes]
rs4396407	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4773835	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4773837	1.00[EUR][1000 genomes]
rs55770575	1.00[EUR][1000 genomes]
rs59816567	1.00[EUR][1000 genomes]
rs60016022	1.00[EUR][1000 genomes]
rs6492756	1.00[EUR][1000 genomes]
rs66527659	1.00[EUR][1000 genomes]
rs7317438	1.00[EUR][1000 genomes]
rs7323876	1.00[EUR][1000 genomes]
rs7336236	1.00[EUR][1000 genomes]
rs73555558	1.00[EUR][1000 genomes]
rs74105410	1.00[EUR][1000 genomes]
rs74105411	1.00[EUR][1000 genomes]
rs74105413	1.00[EUR][1000 genomes]
rs74105424	1.00[EUR][1000 genomes]
rs74105432	1.00[EUR][1000 genomes]
rs74105434	1.00[EUR][1000 genomes]
rs7981129	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7981212	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7994227	1.00[EUR][1000 genomes]
rs7996205	1.00[EUR][1000 genomes]
rs7999651	1.00[EUR][1000 genomes]
rs9282570	1.00[EUR][1000 genomes]
rs9302034	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9524772	1.00[EUR][1000 genomes]
rs9561755	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9561756	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584278	1.00[EUR][1000 genomes]
rs9590093	1.00[EUR][1000 genomes]
rs9590176	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95635600-95636600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:95635600-95637600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:95635600-95637800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr13:95635800-95637000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:95635800-95637200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:95635800-95637400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:95635800-95637600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:95635800-95637800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr13:95636200-95637600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:95636200-95637600	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links