Variant report

Variant	rs7336236
Chromosome Location	chr13:95655681-95655682
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1678359	1.00[YRI][hapmap]
rs1678381	1.00[YRI][hapmap]
rs1678408	1.00[YRI][hapmap]
rs1751013	1.00[YRI][hapmap]
rs1925853	1.00[EUR][1000 genomes]
rs1925867	1.00[EUR][1000 genomes]
rs1925869	1.00[EUR][1000 genomes]
rs1925873	1.00[EUR][1000 genomes]
rs1925881	1.00[EUR][1000 genomes]
rs1925882	1.00[EUR][1000 genomes]
rs3864995	1.00[EUR][1000 genomes]
rs4148541	1.00[JPT][hapmap]
rs4148555	1.00[EUR][1000 genomes]
rs4396407	1.00[EUR][1000 genomes]
rs4773835	1.00[EUR][1000 genomes]
rs4773837	1.00[EUR][1000 genomes]
rs55770575	1.00[EUR][1000 genomes]
rs59816567	1.00[EUR][1000 genomes]
rs60016022	1.00[EUR][1000 genomes]
rs6492756	1.00[EUR][1000 genomes]
rs66527659	1.00[EUR][1000 genomes]
rs7317438	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7323876	1.00[EUR][1000 genomes]
rs7333637	1.00[EUR][1000 genomes]
rs73555558	1.00[EUR][1000 genomes]
rs74105410	1.00[EUR][1000 genomes]
rs74105411	1.00[EUR][1000 genomes]
rs74105413	1.00[EUR][1000 genomes]
rs74105424	1.00[EUR][1000 genomes]
rs74105432	1.00[EUR][1000 genomes]
rs74105434	1.00[EUR][1000 genomes]
rs7981129	1.00[EUR][1000 genomes]
rs7981212	1.00[EUR][1000 genomes]
rs7994227	1.00[EUR][1000 genomes]
rs7996205	1.00[EUR][1000 genomes]
rs7999651	1.00[EUR][1000 genomes]
rs9282570	1.00[EUR][1000 genomes]
rs9302034	1.00[EUR][1000 genomes]
rs9524772	1.00[EUR][1000 genomes]
rs9561755	1.00[EUR][1000 genomes]
rs9561756	1.00[EUR][1000 genomes]
rs9584278	1.00[EUR][1000 genomes]
rs9590093	1.00[EUR][1000 genomes]
rs9590176	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95653000-95656600	Weak transcription	Right Atrium	heart
2	chr13:95654200-95656800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr13:95654400-95656200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:95654800-95655800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:95655000-95655800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:95655000-95655800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr13:95655000-95655800	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr13:95655000-95655800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
9	chr13:95655000-95655800	Flanking Active TSS	Osteobl	bone
10	chr13:95655000-95656000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:95655000-95656000	Bivalent Enhancer	Fetal Brain Male	brain
12	chr13:95655200-95655800	Bivalent Enhancer	Liver	Liver
13	chr13:95655200-95655800	Active TSS	Brain Germinal Matrix	brain
14	chr13:95655200-95655800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
15	chr13:95655200-95655800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr13:95655200-95655800	Enhancers	Lung	lung
17	chr13:95655200-95655800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
18	chr13:95655200-95655800	Enhancers	Spleen	Spleen
19	chr13:95655200-95656000	Enhancers	HSMMtube	muscle
20	chr13:95655400-95655800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
21	chr13:95655400-95655800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:95655400-95655800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
23	chr13:95655400-95655800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr13:95655400-95655800	Flanking Active TSS	Pancreas	Pancrea
25	chr13:95655400-95655800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr13:95655400-95656000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr13:95655400-95656000	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr13:95655400-95657000	Enhancers	Esophagus	oesophagus
29	chr13:95655600-95655800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:95655600-95655800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr13:95655600-95655800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
32	chr13:95655600-95655800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
33	chr13:95655600-95655800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:95655600-95655800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
35	chr13:95655600-95655800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
36	chr13:95655600-95655800	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr13:95655600-95655800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:95655600-95655800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:95655600-95655800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:95655600-95655800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr13:95655600-95655800	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr13:95655600-95655800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
43	chr13:95655600-95655800	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr13:95655600-95655800	Bivalent Enhancer	Colonic Mucosa	Colon
45	chr13:95655600-95655800	Bivalent Enhancer	Colon Smooth Muscle	Colon
46	chr13:95655600-95655800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
47	chr13:95655600-95655800	Bivalent Enhancer	Fetal Muscle Leg	muscle
48	chr13:95655600-95655800	Enhancers	Psoas Muscle	Psoas
49	chr13:95655600-95655800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr13:95655600-95655800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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