Variant report

Variant	rs74105413
Chromosome Location	chr13:95715967-95715968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1678385	1.00[AMR][1000 genomes]
rs16950461	1.00[AMR][1000 genomes]
rs16950472	1.00[AMR][1000 genomes]
rs1925853	1.00[EUR][1000 genomes]
rs1925867	1.00[EUR][1000 genomes]
rs1925869	1.00[EUR][1000 genomes]
rs1925873	1.00[EUR][1000 genomes]
rs1925881	1.00[EUR][1000 genomes]
rs1925882	1.00[EUR][1000 genomes]
rs3864995	1.00[EUR][1000 genomes]
rs4148555	1.00[EUR][1000 genomes]
rs4396407	1.00[EUR][1000 genomes]
rs4773835	1.00[EUR][1000 genomes]
rs4773837	1.00[EUR][1000 genomes]
rs55770575	1.00[EUR][1000 genomes]
rs59816567	1.00[EUR][1000 genomes]
rs60016022	1.00[EUR][1000 genomes]
rs60801806	1.00[AMR][1000 genomes]
rs6492756	1.00[EUR][1000 genomes]
rs66527659	1.00[EUR][1000 genomes]
rs7317438	1.00[EUR][1000 genomes]
rs7323876	1.00[EUR][1000 genomes]
rs7333637	1.00[EUR][1000 genomes]
rs7336236	1.00[EUR][1000 genomes]
rs73555558	1.00[EUR][1000 genomes]
rs74105410	1.00[EUR][1000 genomes]
rs74105411	1.00[EUR][1000 genomes]
rs74105424	1.00[EUR][1000 genomes]
rs74105432	1.00[EUR][1000 genomes]
rs74105434	1.00[EUR][1000 genomes]
rs7981129	1.00[EUR][1000 genomes]
rs7981212	1.00[EUR][1000 genomes]
rs7994227	1.00[EUR][1000 genomes]
rs7996205	1.00[EUR][1000 genomes]
rs7999651	1.00[EUR][1000 genomes]
rs9282570	1.00[EUR][1000 genomes]
rs9302034	1.00[EUR][1000 genomes]
rs9524772	1.00[EUR][1000 genomes]
rs9561755	1.00[EUR][1000 genomes]
rs9561756	1.00[EUR][1000 genomes]
rs9584278	1.00[EUR][1000 genomes]
rs9590139	1.00[AMR][1000 genomes]
rs9590176	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv525194	chr13:95672950-95737192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95669400-95723200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine
4	chr13:95671400-95722200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr13:95672800-95729000	Weak transcription	Colonic Mucosa	Colon
6	chr13:95676000-95740000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:95677800-95718200	Weak transcription	HSMM	muscle
8	chr13:95682000-95718200	Weak transcription	Pancreas	Pancrea
9	chr13:95682800-95721800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:95683200-95751800	Weak transcription	Fetal Lung	lung
11	chr13:95683800-95725800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr13:95684400-95728200	Weak transcription	Adipose Nuclei	Adipose
13	chr13:95684600-95725400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr13:95685000-95721400	Weak transcription	Fetal Intestine Small	intestine
15	chr13:95685200-95734600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr13:95686800-95722600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:95686800-95744600	Weak transcription	Esophagus	oesophagus
18	chr13:95687000-95722600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr13:95691200-95722400	Weak transcription	Fetal Stomach	stomach
20	chr13:95692000-95722400	Weak transcription	Spleen	Spleen
21	chr13:95692200-95722800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr13:95692600-95721200	Weak transcription	Ovary	ovary
23	chr13:95692600-95725600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr13:95692800-95735800	Weak transcription	NHEK	skin
25	chr13:95693800-95722600	Weak transcription	Fetal Intestine Large	intestine
26	chr13:95694400-95718800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:95694600-95718000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr13:95694800-95721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:95694800-95721800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr13:95694800-95725600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr13:95695000-95722000	Weak transcription	Lung	lung
32	chr13:95695000-95722200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr13:95695200-95718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:95695200-95719000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr13:95695600-95723800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:95695800-95721200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr13:95696000-95726200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr13:95702400-95735200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr13:95702600-95718000	Weak transcription	Primary T cells from cord blood	blood
40	chr13:95706000-95719200	Weak transcription	HUVEC	blood vessel
41	chr13:95709200-95728000	Weak transcription	HSMMtube	muscle
42	chr13:95710000-95723600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr13:95710200-95727400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr13:95710400-95741200	Weak transcription	Right Ventricle	heart
45	chr13:95711200-95721400	Weak transcription	Aorta	Aorta
46	chr13:95711600-95716800	Weak transcription	NHLF	lung
47	chr13:95711600-95718800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr13:95711800-95718200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr13:95711800-95718400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr13:95711800-95719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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