Variant report

Variant	rs4148555
Chromosome Location	chr13:95672265-95672266
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1925853	1.00[EUR][1000 genomes]
rs1925867	1.00[EUR][1000 genomes]
rs1925869	1.00[EUR][1000 genomes]
rs1925873	1.00[EUR][1000 genomes]
rs1925881	1.00[EUR][1000 genomes]
rs1925882	1.00[EUR][1000 genomes]
rs3864995	1.00[EUR][1000 genomes]
rs4274306	1.00[ASN][1000 genomes]
rs4396407	1.00[EUR][1000 genomes]
rs4584690	1.00[ASN][1000 genomes]
rs4773835	1.00[EUR][1000 genomes]
rs4773837	1.00[EUR][1000 genomes]
rs55770575	1.00[EUR][1000 genomes]
rs59816567	1.00[EUR][1000 genomes]
rs60016022	1.00[EUR][1000 genomes]
rs6492756	1.00[EUR][1000 genomes]
rs66527659	1.00[EUR][1000 genomes]
rs7317438	1.00[EUR][1000 genomes]
rs7323876	1.00[EUR][1000 genomes]
rs7333637	1.00[EUR][1000 genomes]
rs7336236	1.00[EUR][1000 genomes]
rs73555537	1.00[ASN][1000 genomes]
rs73555558	1.00[EUR][1000 genomes]
rs74105410	1.00[EUR][1000 genomes]
rs74105411	1.00[EUR][1000 genomes]
rs74105413	1.00[EUR][1000 genomes]
rs74105424	1.00[EUR][1000 genomes]
rs74105432	1.00[EUR][1000 genomes]
rs74105434	1.00[EUR][1000 genomes]
rs7981129	1.00[EUR][1000 genomes]
rs7981212	1.00[EUR][1000 genomes]
rs7994227	1.00[EUR][1000 genomes]
rs7996205	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7999651	1.00[EUR][1000 genomes]
rs9282570	1.00[EUR][1000 genomes]
rs9302034	1.00[EUR][1000 genomes]
rs9516518	1.00[ASN][1000 genomes]
rs9524771	1.00[ASN][1000 genomes]
rs9524772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561755	1.00[EUR][1000 genomes]
rs9561756	1.00[EUR][1000 genomes]
rs9584278	1.00[EUR][1000 genomes]
rs9590176	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95655600-95722600	Weak transcription	Gastric	stomach
2	chr13:95661400-95694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:95666800-95681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:95668600-95712000	Weak transcription	NHDF-Ad	bronchial
5	chr13:95669000-95680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:95669000-95686400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:95669400-95672600	Weak transcription	Primary T cells from cord blood	blood
8	chr13:95669400-95672600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:95669400-95686000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:95669400-95690800	Weak transcription	Ovary	ovary
11	chr13:95669400-95723200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:95669600-95672600	Weak transcription	GM12878-XiMat	blood
13	chr13:95669600-95686200	Weak transcription	NHLF	lung
14	chr13:95669600-95692000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr13:95669600-95744000	Weak transcription	Small Intestine	intestine
16	chr13:95670000-95690600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr13:95670200-95677400	Weak transcription	HSMM	muscle
18	chr13:95671200-95675400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:95671400-95690800	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr13:95671400-95690800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr13:95671400-95722200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr13:95671600-95673800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr13:95671600-95688600	Weak transcription	Right Ventricle	heart
24	chr13:95671600-95692200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr13:95672000-95675600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:95672200-95672600	Strong transcription	A549	lung
27	chr13:95672200-95673000	Enhancers	HSMMtube	muscle
28	chr13:95672200-95673000	Enhancers	Osteobl	bone
29	chr13:95672200-95673200	Enhancers	HMEC	breast
30	chr13:95672200-95673200	Strong transcription	K562	blood
31	chr13:95672200-95673400	Enhancers	Muscle Satellite Cultured Cells	--

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