Variant report
| Variant | rs4773837 |
|---|---|
| Chromosome Location | chr13:95660905-95660906 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:95660577..95664387-chr13:95665286..95667497,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs1925853 | 1.00[EUR][1000 genomes] |
| rs1925867 | 1.00[EUR][1000 genomes] |
| rs1925869 | 1.00[EUR][1000 genomes] |
| rs1925873 | 1.00[EUR][1000 genomes] |
| rs1925881 | 1.00[EUR][1000 genomes] |
| rs1925882 | 1.00[EUR][1000 genomes] |
| rs3864995 | 1.00[EUR][1000 genomes] |
| rs4148555 | 1.00[EUR][1000 genomes] |
| rs4396407 | 1.00[EUR][1000 genomes] |
| rs4773835 | 1.00[EUR][1000 genomes] |
| rs55770575 | 1.00[EUR][1000 genomes] |
| rs59816567 | 1.00[EUR][1000 genomes] |
| rs60016022 | 1.00[EUR][1000 genomes] |
| rs6492756 | 1.00[EUR][1000 genomes] |
| rs66527659 | 1.00[EUR][1000 genomes] |
| rs7317438 | 1.00[EUR][1000 genomes] |
| rs7323876 | 1.00[EUR][1000 genomes] |
| rs7333637 | 1.00[EUR][1000 genomes] |
| rs7336236 | 1.00[EUR][1000 genomes] |
| rs73555558 | 1.00[EUR][1000 genomes] |
| rs74105410 | 1.00[EUR][1000 genomes] |
| rs74105411 | 1.00[EUR][1000 genomes] |
| rs74105413 | 1.00[EUR][1000 genomes] |
| rs74105424 | 1.00[EUR][1000 genomes] |
| rs74105432 | 1.00[EUR][1000 genomes] |
| rs74105434 | 1.00[EUR][1000 genomes] |
| rs7981129 | 1.00[EUR][1000 genomes] |
| rs7981212 | 1.00[EUR][1000 genomes] |
| rs7994227 | 1.00[EUR][1000 genomes] |
| rs7996205 | 1.00[EUR][1000 genomes] |
| rs7999651 | 1.00[EUR][1000 genomes] |
| rs9282570 | 1.00[EUR][1000 genomes] |
| rs9302034 | 1.00[EUR][1000 genomes] |
| rs9524772 | 1.00[EUR][1000 genomes] |
| rs9561755 | 1.00[EUR][1000 genomes] |
| rs9561756 | 1.00[EUR][1000 genomes] |
| rs9584278 | 1.00[EUR][1000 genomes] |
| rs9590176 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832688 | chr13:95633193-95780198 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95655600-95722600 | Weak transcription | Gastric | stomach |
| 2 | chr13:95657000-95661000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
