Variant report

Variant	rs73547592
Chromosome Location	chr13:94423322-94423323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94422038..94423634-chr13:94425606..94427255,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10492636	0.81[AMR][1000 genomes]
rs10492638	0.83[AMR][1000 genomes]
rs12427626	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12427786	0.83[AMR][1000 genomes]
rs12427803	0.83[AMR][1000 genomes]
rs12428167	0.81[AMR][1000 genomes]
rs12428209	0.81[AMR][1000 genomes]
rs12428379	0.81[EUR][1000 genomes]
rs12428924	0.81[AMR][1000 genomes]
rs12429491	0.81[AMR][1000 genomes]
rs12429608	0.83[AMR][1000 genomes]
rs12429856	0.83[AMR][1000 genomes]
rs12430378	0.81[AMR][1000 genomes]
rs17174721	0.83[AMR][1000 genomes]
rs17174735	0.83[AMR][1000 genomes]
rs17253241	0.83[AMR][1000 genomes]
rs17253255	0.83[AMR][1000 genomes]
rs17253262	0.83[AMR][1000 genomes]
rs17253269	0.83[AMR][1000 genomes]
rs2892668	0.83[AMR][1000 genomes]
rs4489872	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56118807	0.81[AMR][1000 genomes]
rs56396732	0.83[AMR][1000 genomes]
rs56970055	0.83[AMR][1000 genomes]
rs57002007	0.83[AMR][1000 genomes]
rs57433205	0.83[AMR][1000 genomes]
rs57605778	0.83[AMR][1000 genomes]
rs57800923	0.83[AMR][1000 genomes]
rs58794076	0.81[AMR][1000 genomes]
rs59283174	0.83[AMR][1000 genomes]
rs61462500	0.83[AMR][1000 genomes]
rs61506126	0.81[AMR][1000 genomes]
rs6492679	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs74108858	0.83[AMR][1000 genomes]
rs74108860	0.83[AMR][1000 genomes]
rs74108861	0.83[AMR][1000 genomes]
rs74108875	0.83[AMR][1000 genomes]
rs74108888	0.83[AMR][1000 genomes]
rs74108889	0.83[AMR][1000 genomes]
rs74108892	0.83[AMR][1000 genomes]
rs74108894	0.83[AMR][1000 genomes]
rs74108896	0.83[AMR][1000 genomes]
rs74108897	0.83[AMR][1000 genomes]
rs74108898	0.83[AMR][1000 genomes]
rs74108901	0.83[AMR][1000 genomes]
rs74108902	0.83[AMR][1000 genomes]
rs74111004	0.83[AMR][1000 genomes]
rs74111005	0.81[AMR][1000 genomes]
rs74111006	0.83[AMR][1000 genomes]
rs74111008	0.83[AMR][1000 genomes]
rs74111010	0.81[AMR][1000 genomes]
rs74111011	0.83[AMR][1000 genomes]
rs74111015	0.81[AMR][1000 genomes]
rs74111033	0.81[AMR][1000 genomes]
rs74111034	0.81[AMR][1000 genomes]
rs74111035	0.81[AMR][1000 genomes]
rs74111039	0.81[AMR][1000 genomes]
rs74111047	0.81[AMR][1000 genomes]
rs7995013	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1130	chr13:94410849-94455628	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94415800-94423600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:94416600-94429000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:94419800-94423800	Enhancers	Fetal Stomach	stomach
4	chr13:94420400-94423600	Enhancers	Colon Smooth Muscle	Colon
5	chr13:94420600-94424400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:94420600-94429000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:94420800-94423800	Enhancers	Fetal Heart	heart
8	chr13:94420800-94427600	Weak transcription	A549	lung
9	chr13:94421000-94423400	Weak transcription	Fetal Kidney	kidney
10	chr13:94421400-94428000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr13:94421600-94423800	Enhancers	Ovary	ovary
12	chr13:94421800-94423800	Enhancers	Fetal Lung	lung
13	chr13:94421800-94424400	Enhancers	Fetal Intestine Small	intestine
14	chr13:94422000-94423600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:94422200-94423400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:94422200-94423400	Weak transcription	Liver	Liver
17	chr13:94422800-94423800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr13:94422800-94423800	Enhancers	Aorta	Aorta
19	chr13:94422800-94424000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr13:94423000-94423800	Enhancers	Brain Germinal Matrix	brain
21	chr13:94423000-94423800	Enhancers	Fetal Brain Female	brain
22	chr13:94423200-94423600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr13:94423200-94423600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr13:94423200-94423800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:94423200-94423800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:94423200-94424000	Enhancers	NH-A	brain
27	chr13:94423200-94424200	Weak transcription	Fetal Intestine Large	intestine
28	chr13:94423200-94424600	Enhancers	Muscle Satellite Cultured Cells	--
29	chr13:94423200-94424600	Enhancers	Osteobl	bone
30	chr13:94423200-94427400	Weak transcription	HepG2	liver

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