Variant report

Variant	rs73548901
Chromosome Location	chr11:107785083-107785084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2509492	1.00[AFR][1000 genomes]
rs58295671	1.00[AFR][1000 genomes]
rs58690713	0.91[AFR][1000 genomes]
rs73548894	0.82[AFR][1000 genomes]
rs73551404	1.00[AFR][1000 genomes]
rs73551411	1.00[AFR][1000 genomes]
rs73551413	1.00[AFR][1000 genomes]
rs73551418	1.00[AFR][1000 genomes]
rs73551423	1.00[AFR][1000 genomes]
rs73551429	1.00[AFR][1000 genomes]
rs73551431	1.00[AFR][1000 genomes]
rs73551493	1.00[AFR][1000 genomes]
rs73551498	1.00[AFR][1000 genomes]
rs73553018	0.91[AFR][1000 genomes]
rs73553021	0.91[AFR][1000 genomes]
rs73553024	0.84[AFR][1000 genomes]
rs73553027	0.91[AFR][1000 genomes]
rs73553029	0.91[AFR][1000 genomes]
rs73553031	0.91[AFR][1000 genomes]
rs73553033	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
9	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv1043139	chr11:107725297-107869216	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv898381	chr11:107729106-107847983	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv898382	chr11:107733335-107847983	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv478	chr11:107771032-107790260	Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
14	esv1807549	chr11:107776667-107788375	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
15	esv1808781	chr11:107776667-107788375	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
16	esv1815769	chr11:107776667-107788375	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
17	esv1820088	chr11:107776667-107788375	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
18	nsv556389	chr11:107779236-107786469	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv556390	chr11:107779236-107787067	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv556391	chr11:107779236-107787121	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	nsv556392	chr11:107779236-107788312	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv556393	chr11:107779236-107788375	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
23	nsv556394	chr11:107779236-107795722	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv2633789	chr11:107780027-107788214	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv820170	chr11:107782011-107788385	Bivalent Enhancer Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
26	esv3474997	chr11:107782342-107787540	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv3475008	chr11:107782342-107787540	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
28	nsv826080	chr11:107784058-107788355	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv826081	chr11:107784058-107788486	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
30	esv15648	chr11:107784298-107788439	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
31	esv3475019	chr11:107784342-107790340	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
32	esv3475030	chr11:107784342-107790340	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
33	nsv826082	chr11:107784469-107788235	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
34	nsv826083	chr11:107784469-107788355	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
35	nsv442627	chr11:107784507-107787713	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
36	nsv514591	chr11:107784638-107786870	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
37	nsv556395	chr11:107784789-107786655	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
38	nsv556396	chr11:107784789-107786874	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
39	nsv556397	chr11:107784789-107787067	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
40	esv1822300	chr11:107784789-107787121	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv556398	chr11:107784789-107787121	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv556399	chr11:107784789-107787126	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
43	nsv556400	chr11:107784789-107787859	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
44	nsv556401	chr11:107784789-107788312	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
45	esv1804298	chr11:107784789-107788375	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
46	esv1804582	chr11:107784789-107788375	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
47	esv1807341	chr11:107784789-107788375	Enhancers Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv1812083	chr11:107784789-107788375	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
49	esv1820140	chr11:107784789-107788375	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
50	esv1823307	chr11:107784789-107788375	Weak transcription Bivalent Enhancer Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107785000-107786400	Enhancers	Placenta	Placenta

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