Variant report

Variant	rs2509492
Chromosome Location	chr11:107804447-107804448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs58295671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58690713	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548894	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548901	1.00[AFR][1000 genomes]
rs73551404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73551500	1.00[AMR][1000 genomes]
rs73553018	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553024	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553027	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553029	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553033	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73559271	1.00[AMR][1000 genomes]
rs7931198	1.00[AMR][1000 genomes]
rs7932328	1.00[AMR][1000 genomes]
rs7944235	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
9	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv1043139	chr11:107725297-107869216	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv898381	chr11:107729106-107847983	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv898382	chr11:107733335-107847983	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107800800-107807400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:107800800-107810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:107800800-107818800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:107800800-107818800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:107801000-107818600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:107801000-107818800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:107801200-107805200	Weak transcription	Fetal Brain Female	brain
8	chr11:107801200-107818200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:107801200-107818600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:107801400-107818600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:107803200-107813000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:107803200-107826800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:107803200-107831400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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