Variant report

Variant	rs7932328
Chromosome Location	chr11:107996109-107996110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:107995538-107996262	HepG2	liver:	n/a	n/a
2	GATA1	chr11:107995618-107996271	PBDE	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:107994261..107996818-chr11:108366959..108369938,2	K562	blood:
2	chr11:107990918..107994188-chr11:107994628..107998431,6	K562	blood:
3	chr11:107990918..107994596-chr11:107994628..107998415,6	K562	blood:
4	chr11:107995883..108000006-chr11:108001500..108005772,6	K562	blood:
5	chr11:107993563..107996338-chr11:108068395..108070955,2	K562	blood:
6	chr11:107995936..108000006-chr11:108001647..108004743,4	K562	blood:
7	chr11:107994334..107996206-chr11:108091930..108093752,2	K562	blood:
8	chr11:107991962..107993559-chr11:107994451..107997054,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255467	TF binding region
ENSG00000255467	Chromatin interaction
ENSG00000178202	Chromatin interaction
ENSG00000075239	Chromatin interaction
ENSG00000149311	Chromatin interaction
ENSG00000149308	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs2509492	1.00[AMR][1000 genomes]
rs58295671	1.00[AMR][1000 genomes]
rs58690713	1.00[AMR][1000 genomes]
rs7112974	1.00[AFR][1000 genomes]
rs7115490	1.00[AMR][1000 genomes]
rs73551404	1.00[AMR][1000 genomes]
rs73551411	1.00[AMR][1000 genomes]
rs73551413	1.00[AMR][1000 genomes]
rs73551418	1.00[AMR][1000 genomes]
rs73551423	1.00[AMR][1000 genomes]
rs73551429	1.00[AMR][1000 genomes]
rs73551431	1.00[AMR][1000 genomes]
rs73551493	1.00[AMR][1000 genomes]
rs73551498	1.00[AMR][1000 genomes]
rs73551500	1.00[AMR][1000 genomes]
rs73553018	1.00[AMR][1000 genomes]
rs73553021	1.00[AMR][1000 genomes]
rs73553024	1.00[AMR][1000 genomes]
rs73553027	1.00[AMR][1000 genomes]
rs73553029	1.00[AMR][1000 genomes]
rs73553031	1.00[AMR][1000 genomes]
rs73553033	1.00[AMR][1000 genomes]
rs73559271	1.00[AMR][1000 genomes]
rs7931198	1.00[AMR][1000 genomes]
rs7944235	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107993000-108002600	Weak transcription	Placenta	Placenta
2	chr11:107993200-107996200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:107993200-107998800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:107993200-108002800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:107993200-108013200	Weak transcription	Fetal Thymus	thymus
6	chr11:107993200-108018600	Weak transcription	Thymus	Thymus
7	chr11:107993200-108021800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:107993200-108030000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:107993200-108069600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:107993400-107996200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr11:107993400-107998600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:107993400-108004000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:107993400-108004200	Weak transcription	Primary T cells from cord blood	blood
14	chr11:107993400-108006000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:107993400-108009600	Weak transcription	Colonic Mucosa	Colon
16	chr11:107993400-108011200	Weak transcription	Esophagus	oesophagus
17	chr11:107993400-108012600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:107993400-108013200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:107993400-108014000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:107993400-108017800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:107993600-107996800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:107993600-107996800	Weak transcription	Fetal Stomach	stomach
23	chr11:107993600-107997000	Weak transcription	NHEK	skin
24	chr11:107993600-107998400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:107993600-107998600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:107993600-108004000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:107993600-108004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:107993600-108005800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:107993600-108005800	Weak transcription	NH-A	brain
30	chr11:107993600-108006600	Weak transcription	HMEC	breast
31	chr11:107993600-108006800	Weak transcription	HSMMtube	muscle
32	chr11:107993600-108013200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:107993600-108018800	Weak transcription	Fetal Kidney	kidney
34	chr11:107993800-107997400	Enhancers	Fetal Heart	heart
35	chr11:107993800-107998200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:107993800-108010800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:107994000-107997000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:107994000-108029600	Weak transcription	Fetal Brain Male	brain
39	chr11:107994200-107996400	Enhancers	Duodenum Mucosa	Duodenum
40	chr11:107994200-108005800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:107994400-108003800	Weak transcription	Fetal Intestine Large	intestine
42	chr11:107994600-107996200	Flanking Active TSS	Liver	Liver
43	chr11:107994600-107996200	Enhancers	Pancreas	Pancrea
44	chr11:107994600-107996200	Enhancers	Right Atrium	heart
45	chr11:107994600-108002800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:107994600-108009400	Weak transcription	Fetal Brain Female	brain
47	chr11:107994600-108013800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:107994800-107996200	Enhancers	Right Ventricle	heart
49	chr11:107994800-107997000	Weak transcription	Psoas Muscle	Psoas
50	chr11:107994800-108002800	Weak transcription	Fetal Lung	lung

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