Variant report

Variant	rs73549555
Chromosome Location	chr13:94459819-94459820
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12100033	0.82[EUR][1000 genomes]
rs12100423	0.82[EUR][1000 genomes]
rs1952699	0.82[EUR][1000 genomes]
rs56261266	0.82[EUR][1000 genomes]
rs56264049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57307452	0.82[EUR][1000 genomes]
rs59652531	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs59816220	0.82[EUR][1000 genomes]
rs60720642	0.82[EUR][1000 genomes]
rs60822231	0.82[EUR][1000 genomes]
rs60858156	0.82[EUR][1000 genomes]
rs61200545	0.82[EUR][1000 genomes]
rs7319881	0.82[EUR][1000 genomes]
rs7332246	0.82[EUR][1000 genomes]
rs73549574	0.82[EUR][1000 genomes]
rs73551724	0.82[EUR][1000 genomes]
rs73551728	0.82[EUR][1000 genomes]
rs73551731	0.82[EUR][1000 genomes]
rs73551734	0.82[EUR][1000 genomes]
rs73551737	0.82[EUR][1000 genomes]
rs73551748	0.82[EUR][1000 genomes]
rs73551753	0.82[EUR][1000 genomes]
rs73551755	0.82[EUR][1000 genomes]
rs73551790	0.82[EUR][1000 genomes]
rs73553721	0.82[EUR][1000 genomes]
rs73553727	0.82[EUR][1000 genomes]
rs74108845	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs74108879	0.82[EUR][1000 genomes]
rs9589823	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832684	chr13:94379507-94550853	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94450200-94464200	Weak transcription	HSMM	muscle
2	chr13:94452200-94462000	Weak transcription	Ovary	ovary
3	chr13:94457800-94460200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:94458200-94460200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:94458200-94461000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:94458400-94462600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:94459000-94460000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:94459000-94460200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:94459400-94460000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr13:94459400-94460200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:94459400-94461400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr13:94459600-94460000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr13:94459600-94460000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr13:94459600-94460200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr13:94459800-94460000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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