Variant report

Variant	rs73550535
Chromosome Location	chr11:108441321-108441322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108440158..108442380-chr11:108452986..108455968,2	MCF-7	breast:
2	chr11:108438618..108440610-chr11:108440697..108442271,2	K562	blood:

Variant related genes	Relation type
ENSG00000110723	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2170492	1.00[AMR][1000 genomes]
rs2624142	1.00[AMR][1000 genomes]
rs2640743	1.00[AMR][1000 genomes]
rs2852203	1.00[AMR][1000 genomes]
rs73550537	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73550541	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898387	chr11:108440814-108535792	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108417200-108441400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:108422400-108441600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:108423600-108441400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:108428600-108442000	Weak transcription	K562	blood
5	chr11:108432800-108441600	Weak transcription	HMEC	breast
6	chr11:108433000-108444000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:108434600-108441600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:108434600-108462400	Weak transcription	Gastric	stomach
9	chr11:108436600-108441600	Weak transcription	Stomach Mucosa	stomach
10	chr11:108439200-108442200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:108439400-108443400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:108439600-108441400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:108439800-108442000	Weak transcription	Esophagus	oesophagus
14	chr11:108440200-108441400	Weak transcription	NHEK	skin
15	chr11:108440600-108443600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:108440800-108441800	Weak transcription	Liver	Liver
17	chr11:108441000-108443800	Enhancers	Placenta	Placenta
18	chr11:108441200-108441400	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr11:108441200-108442000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:108441200-108442600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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