Variant report

Variant	rs73550537
Chromosome Location	chr11:108441970-108441971
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:108441897-108442051	MCF10A-Er-Src	breast:	n/a	chr11:108441959-108441967
2	STAT3	chr11:108441832-108442046	MCF10A-Er-Src	breast:	n/a	chr11:108441959-108441967
3	MYC	chr11:108441724-108442035	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr11:108441814-108442117	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr11:108441787-108442079	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr11:108441905-108442021	K562	blood:	n/a	n/a
7	MYC	chr11:108441787-108442031	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr11:108441835-108442130	HepG2	liver:	n/a	n/a
9	E2F4	chr11:108441836-108442125	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr11:108441805-108442119	Hela-S3	cervix:	n/a	n/a
11	KAP1	chr11:108441693-108442451	HEK293	kidney:	n/a	n/a
12	FOS	chr11:108441756-108442111	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr11:108441759-108442129	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108440158..108442380-chr11:108452986..108455968,2	MCF-7	breast:
2	chr11:108438618..108440610-chr11:108440697..108442271,2	K562	blood:

Variant related genes	Relation type
EXPH5	TF binding region
ENSG00000110723	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2170492	1.00[AMR][1000 genomes]
rs2624142	1.00[AMR][1000 genomes]
rs2640743	1.00[AMR][1000 genomes]
rs2852203	1.00[AMR][1000 genomes]
rs73550535	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898387	chr11:108440814-108535792	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108428600-108442000	Weak transcription	K562	blood
2	chr11:108433000-108444000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:108434600-108462400	Weak transcription	Gastric	stomach
4	chr11:108439200-108442200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:108439400-108443400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:108439800-108442000	Weak transcription	Esophagus	oesophagus
7	chr11:108440600-108443600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:108441000-108443800	Enhancers	Placenta	Placenta
9	chr11:108441200-108442000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:108441200-108442600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:108441400-108442000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:108441400-108442800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:108441400-108443800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:108441600-108442200	Enhancers	Stomach Mucosa	stomach
15	chr11:108441600-108442400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:108441600-108443000	Enhancers	HMEC	breast
17	chr11:108441600-108443200	Flanking Active TSS	NHEK	skin
18	chr11:108441600-108443800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:108441800-108442000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:108441800-108442000	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:108441800-108442400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:108441800-108442800	Enhancers	Liver	Liver
23	chr11:108441800-108442800	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr11:108441800-108443200	Enhancers	HUES6 Cell Line	embryonic stem cell

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