The 2.0 version of rSNPBase

Variant report

Variant rs73550550
Chromosome Location chr19:41758880-41758881
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41730200-41762600 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:41732600-41768800 Weak transcription Small Intestine intestine
3 chr19:41733200-41767200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr19:41733200-41767200 Strong transcription Muscle Satellite Cultured Cells --
5 chr19:41736000-41767200 Strong transcription Osteobl bone
6 chr19:41736000-41767400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr19:41736400-41767800 Strong transcription Placenta Amnion Placenta Amnion
8 chr19:41736600-41766200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr19:41736600-41766600 Strong transcription Fetal Stomach stomach
10 chr19:41736600-41767000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr19:41736600-41767200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr19:41736600-41767400 Strong transcription HSMM muscle
13 chr19:41736600-41767800 Weak transcription Brain Angular Gyrus brain
14 chr19:41736800-41762400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr19:41737200-41766000 Strong transcription Stomach Smooth Muscle stomach
16 chr19:41737400-41766600 Strong transcription Breast Myoepithelial Primary Cells Breast
17 chr19:41738000-41761000 Strong transcription Colon Smooth Muscle Colon
18 chr19:41738800-41767400 Weak transcription Fetal Brain Male brain
19 chr19:41739400-41767400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr19:41739800-41766200 Strong transcription HUES64 Cell Line embryonic stem cell
21 chr19:41742600-41767600 Strong transcription A549 lung
22 chr19:41743800-41761200 Strong transcription H1 Cell Line embryonic stem cell
23 chr19:41745200-41765000 Weak transcription Fetal Brain Female brain
24 chr19:41745600-41760600 Strong transcription HUES48 Cell Line embryonic stem cell
25 chr19:41745800-41762200 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr19:41745800-41767200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr19:41753400-41767000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr19:41753800-41759800 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr19:41753800-41767400 Strong transcription NHDF-Ad bronchial
30 chr19:41754200-41766000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr19:41754200-41766000 Strong transcription NHEK skin
32 chr19:41754200-41767200 Strong transcription HUES6 Cell Line embryonic stem cell
33 chr19:41754600-41767200 Weak transcription Brain Germinal Matrix brain
34 chr19:41754800-41760200 Strong transcription Fetal Intestine Small intestine
35 chr19:41755000-41759400 Weak transcription Esophagus oesophagus
36 chr19:41755000-41762400 Weak transcription Brain Inferior Temporal Lobe brain
37 chr19:41755000-41767400 Weak transcription Fetal Thymus thymus
38 chr19:41755000-41767800 Weak transcription Hela-S3 cervix
39 chr19:41755000-41768000 Weak transcription Gastric stomach
40 chr19:41756000-41760200 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr19:41756200-41764600 Weak transcription Liver Liver
42 chr19:41756400-41759200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr19:41756400-41762200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr19:41756400-41762400 Weak transcription Fetal Kidney kidney
45 chr19:41756800-41762200 Weak transcription Brain Substantia Nigra brain
46 chr19:41757000-41762200 Weak transcription Brain Anterior Caudate brain
47 chr19:41757000-41763400 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr19:41757200-41766200 Strong transcription ES-I3 Cell Line embryonic stem cell
49 chr19:41757400-41767800 Weak transcription Right Atrium heart
50 chr19:41757600-41759800 Strong transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015