Variant report

Variant	rs73552775
Chromosome Location	chr19:41827544-41827545
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41827402..41828273-chr19:41859688..41860493,2	K562	blood:
2	chr19:41813982..41818537-chr19:41824784..41829010,7	MCF-7	breast:
3	chr19:41826823..41830968-chr19:41831922..41834042,4	K562	blood:
4	chr19:41821189..41824039-chr19:41826906..41830511,3	MCF-7	breast:
5	chr19:41813217..41816431-chr19:41827201..41830694,5	MCF-7	breast:
6	chr19:41827333..41835079-chr19:41855373..41860241,10	K562	blood:
7	chr19:41827408..41831164-chr19:41901595..41905295,3	MCF-7	breast:
8	chr19:41825498..41830119-chr19:41857290..41861615,7	MCF-7	breast:
9	chr19:41825452..41832651-chr19:41855170..41863054,16	K562	blood:

No data

Variant related genes	Relation type
ENSG00000248098	Chromatin interaction
ENSG00000142046	Chromatin interaction
ENSG00000255730	Chromatin interaction
ENSG00000142039	Chromatin interaction
ENSG00000268987	Chromatin interaction
ENSG00000105329	Chromatin interaction
ENSG00000077348	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58359669	1.00[AMR][1000 genomes]
rs73550550	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911769	chr19:41813676-41845801	Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41817000-41827800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:41817600-41827600	Strong transcription	Fetal Stomach	stomach
3	chr19:41817800-41828800	Strong transcription	Fetal Intestine Small	intestine
4	chr19:41817800-41829200	Weak transcription	Fetal Brain Male	brain
5	chr19:41818000-41828800	Weak transcription	Hela-S3	cervix
6	chr19:41818000-41829000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:41818200-41827600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:41818200-41828400	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr19:41818200-41831600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr19:41818400-41829000	Strong transcription	Fetal Intestine Large	intestine
11	chr19:41818400-41831200	Strong transcription	Thymus	Thymus
12	chr19:41818600-41854800	Strong transcription	Dnd41	blood
13	chr19:41819000-41827800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr19:41819000-41830600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr19:41819200-41829200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr19:41819400-41827600	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr19:41819600-41828600	Weak transcription	Small Intestine	intestine
18	chr19:41819600-41829000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr19:41821400-41830400	Strong transcription	Fetal Brain Female	brain
20	chr19:41821600-41830000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr19:41821800-41827800	Strong transcription	Brain Angular Gyrus	brain
22	chr19:41821800-41827800	Strong transcription	GM12878-XiMat	blood
23	chr19:41821800-41828600	Strong transcription	Brain Substantia Nigra	brain
24	chr19:41821800-41828600	Strong transcription	Gastric	stomach
25	chr19:41821800-41829000	Strong transcription	Brain Anterior Caudate	brain
26	chr19:41822000-41830600	Strong transcription	Primary T cells from cord blood	blood
27	chr19:41822400-41829000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:41822400-41831000	Weak transcription	Psoas Muscle	Psoas
29	chr19:41823200-41830600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr19:41823200-41832000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr19:41823400-41829200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr19:41823400-41830400	Weak transcription	Fetal Kidney	kidney
33	chr19:41823400-41830800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr19:41823400-41832200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr19:41824200-41830400	Strong transcription	Brain Germinal Matrix	brain
36	chr19:41824400-41827800	Strong transcription	Fetal Lung	lung
37	chr19:41824400-41830000	Genic enhancers	Placenta	Placenta
38	chr19:41824400-41830600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr19:41824400-41834000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:41824600-41827800	Strong transcription	Primary B cells from cord blood	blood
41	chr19:41824600-41828600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr19:41824600-41829000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr19:41824600-41830800	Genic enhancers	Spleen	Spleen
44	chr19:41824800-41829200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr19:41825000-41830600	Genic enhancers	Right Ventricle	heart
46	chr19:41825400-41829000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr19:41825400-41829000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr19:41825400-41829000	Weak transcription	HMEC	breast
49	chr19:41825600-41829800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr19:41825800-41827600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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