Variant report

Variant	rs73553748
Chromosome Location	chr13:94562967-94562968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10492636	0.89[EUR][1000 genomes]
rs10492638	0.89[EUR][1000 genomes]
rs12427786	0.89[EUR][1000 genomes]
rs12427803	0.89[EUR][1000 genomes]
rs12428167	0.89[EUR][1000 genomes]
rs12428209	0.89[EUR][1000 genomes]
rs12428924	0.89[EUR][1000 genomes]
rs12429491	0.89[EUR][1000 genomes]
rs12429608	0.89[EUR][1000 genomes]
rs12429856	0.89[EUR][1000 genomes]
rs12430378	0.89[EUR][1000 genomes]
rs17174721	0.89[EUR][1000 genomes]
rs17174735	0.89[EUR][1000 genomes]
rs17253234	0.89[EUR][1000 genomes]
rs17253241	0.89[EUR][1000 genomes]
rs17253255	0.89[EUR][1000 genomes]
rs17253262	0.89[EUR][1000 genomes]
rs17253269	0.89[EUR][1000 genomes]
rs2389052	0.89[EUR][1000 genomes]
rs2892668	0.89[EUR][1000 genomes]
rs56118807	0.89[EUR][1000 genomes]
rs56396732	0.89[EUR][1000 genomes]
rs56970055	0.89[EUR][1000 genomes]
rs57002007	0.89[EUR][1000 genomes]
rs57433205	0.89[EUR][1000 genomes]
rs57605778	0.89[EUR][1000 genomes]
rs58794076	0.89[EUR][1000 genomes]
rs59283174	0.89[EUR][1000 genomes]
rs60257121	0.89[EUR][1000 genomes]
rs61462500	0.89[EUR][1000 genomes]
rs61506126	0.89[EUR][1000 genomes]
rs74108858	0.89[EUR][1000 genomes]
rs74108860	0.89[EUR][1000 genomes]
rs74108861	0.89[EUR][1000 genomes]
rs74108875	0.89[EUR][1000 genomes]
rs74108888	0.89[EUR][1000 genomes]
rs74108889	0.89[EUR][1000 genomes]
rs74108892	0.89[EUR][1000 genomes]
rs74108894	0.89[EUR][1000 genomes]
rs74108896	0.89[EUR][1000 genomes]
rs74108897	0.89[EUR][1000 genomes]
rs74108898	0.89[EUR][1000 genomes]
rs74108901	0.89[EUR][1000 genomes]
rs74108902	0.89[EUR][1000 genomes]
rs74111004	0.89[EUR][1000 genomes]
rs74111006	0.89[EUR][1000 genomes]
rs74111008	0.89[EUR][1000 genomes]
rs74111010	0.89[EUR][1000 genomes]
rs74111011	0.89[EUR][1000 genomes]
rs74111015	0.89[EUR][1000 genomes]
rs74111033	0.89[EUR][1000 genomes]
rs74111034	0.89[EUR][1000 genomes]
rs74111035	0.89[EUR][1000 genomes]
rs74111039	0.89[EUR][1000 genomes]
rs74111047	0.89[EUR][1000 genomes]
rs7995013	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv933807	chr13:94187158-94845505	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1045230	chr13:94277683-94764671	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94561000-94572600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:94562000-94567400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:94562600-94567000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links