Variant report
| Variant | rs73553779 |
|---|---|
| Chromosome Location | chr6:132576646-132576647 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000227220 | Chromatin interaction |
| ENSG00000197594 | Chromatin interaction |
| ENSG00000118523 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs57477220 | 1.00[AMR][1000 genomes] |
| rs57484838 | 1.00[AMR][1000 genomes] |
| rs61700588 | 1.00[AFR][1000 genomes] |
| rs6938195 | 1.00[AMR][1000 genomes] |
| rs73541966 | 1.00[AMR][1000 genomes] |
| rs73541967 | 1.00[AMR][1000 genomes] |
| rs73541976 | 1.00[AMR][1000 genomes] |
| rs73541988 | 1.00[AMR][1000 genomes] |
| rs73541989 | 1.00[AMR][1000 genomes] |
| rs73541992 | 1.00[AMR][1000 genomes] |
| rs73541998 | 1.00[AMR][1000 genomes] |
| rs73544003 | 1.00[AMR][1000 genomes] |
| rs73544004 | 1.00[AMR][1000 genomes] |
| rs73544007 | 1.00[AMR][1000 genomes] |
| rs73544041 | 1.00[AMR][1000 genomes] |
| rs73544090 | 1.00[AMR][1000 genomes] |
| rs73544093 | 1.00[AMR][1000 genomes] |
| rs73553747 | 1.00[AFR][1000 genomes] |
| rs73553751 | 1.00[AFR][1000 genomes] |
| rs73553753 | 1.00[AMR][1000 genomes] |
| rs73553760 | 1.00[AFR][1000 genomes] |
| rs73553769 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73553785 | 1.00[AMR][1000 genomes] |
| rs7751860 | 1.00[AMR][1000 genomes] |
| rs9483436 | 1.00[AMR][1000 genomes] |
| rs9483438 | 1.00[AMR][1000 genomes] |
| rs9483439 | 1.00[AMR][1000 genomes] |
| rs9493290 | 1.00[AMR][1000 genomes] |
| rs9493291 | 1.00[AMR][1000 genomes] |
| rs9493293 | 1.00[AMR][1000 genomes] |
| rs9493295 | 1.00[AMR][1000 genomes] |
| rs9493296 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132569600-132581600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr6:132575400-132588400 | Weak transcription | Aorta | Aorta |
