Variant report

Variant	rs73553785
Chromosome Location	chr6:132578496-132578497
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs57477220	1.00[AMR][1000 genomes]
rs57484838	1.00[AMR][1000 genomes]
rs6938195	1.00[AMR][1000 genomes]
rs73541966	1.00[AMR][1000 genomes]
rs73541967	1.00[AMR][1000 genomes]
rs73541976	1.00[AMR][1000 genomes]
rs73541988	1.00[AMR][1000 genomes]
rs73541989	1.00[AMR][1000 genomes]
rs73541992	1.00[AMR][1000 genomes]
rs73541998	1.00[AMR][1000 genomes]
rs73544003	1.00[AMR][1000 genomes]
rs73544004	1.00[AMR][1000 genomes]
rs73544007	1.00[AMR][1000 genomes]
rs73544041	1.00[AMR][1000 genomes]
rs73544090	1.00[AMR][1000 genomes]
rs73544093	1.00[AMR][1000 genomes]
rs73553753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553769	1.00[AMR][1000 genomes]
rs73553779	1.00[AMR][1000 genomes]
rs7751860	1.00[AMR][1000 genomes]
rs9483436	1.00[AMR][1000 genomes]
rs9483438	1.00[AMR][1000 genomes]
rs9483439	1.00[AMR][1000 genomes]
rs9493290	1.00[AMR][1000 genomes]
rs9493291	1.00[AMR][1000 genomes]
rs9493293	1.00[AMR][1000 genomes]
rs9493295	1.00[AMR][1000 genomes]
rs9493296	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:132575400-132588400	Weak transcription	Aorta	Aorta
3	chr6:132578400-132579800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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