Variant report

Variant	rs73553898
Chromosome Location	chr11:106850659-106850660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57421455	1.00[AMR][1000 genomes]
rs57713489	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59567561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59691529	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60839369	1.00[AMR][1000 genomes]
rs61133599	1.00[AMR][1000 genomes]
rs73553852	1.00[AMR][1000 genomes]
rs73553861	1.00[AMR][1000 genomes]
rs73553862	1.00[AMR][1000 genomes]
rs73553863	1.00[AMR][1000 genomes]
rs73555805	0.86[AFR][1000 genomes]
rs73555830	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555833	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555834	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555836	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555837	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
4	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:106845600-106853600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:106847800-106851000	Weak transcription	Ovary	ovary
8	chr11:106848600-106854000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:106849800-106851400	Weak transcription	Fetal Lung	lung
10	chr11:106850400-106851000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:106850400-106851000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:106850400-106851200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:106850600-106851600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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