Variant report

Variant	rs73553863
Chromosome Location	chr11:106805493-106805494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs57421455	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57713489	1.00[AMR][1000 genomes]
rs59567561	1.00[AMR][1000 genomes]
rs59691529	1.00[AMR][1000 genomes]
rs60839369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61133599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553861	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553862	1.00[AMR][1000 genomes]
rs73553898	1.00[AMR][1000 genomes]
rs73555830	1.00[AMR][1000 genomes]
rs73555833	1.00[AMR][1000 genomes]
rs73555834	1.00[AMR][1000 genomes]
rs73555836	1.00[AMR][1000 genomes]
rs73555837	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898362	chr11:106715879-106809457	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv556231	chr11:106737224-106815963	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1818906	chr11:106786428-106831384	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106786200-106806800	Weak transcription	Fetal Lung	lung
2	chr11:106795000-106810600	Weak transcription	Fetal Brain Male	brain
3	chr11:106805000-106805800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:106805200-106806000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:106805200-106806000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:106805200-106806200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:106805200-106806400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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