Variant report

Variant	rs73555373
Chromosome Location	chr11:107892739-107892740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107878405..107881825-chr11:107892179..107894837,3	MCF-7	breast:
2	chr11:107887094..107888620-chr11:107890311..107893123,2	K562	blood:
3	chr11:107879497..107881509-chr11:107891031..107894169,3	K562	blood:
4	chr11:107879656..107881265-chr11:107891975..107894169,2	K562	blood:
5	chr11:107891775..107896775-chr11:107898188..107900816,4	K562	blood:

Variant related genes	Relation type
ENSG00000166266	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11212463	1.00[EUR][1000 genomes]
rs12289394	1.00[EUR][1000 genomes]
rs12296042	1.00[EUR][1000 genomes]
rs17107554	1.00[EUR][1000 genomes]
rs28414916	1.00[EUR][1000 genomes]
rs4028256	1.00[EUR][1000 genomes]
rs56132728	1.00[EUR][1000 genomes]
rs7106586	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73546826	1.00[EUR][1000 genomes]
rs73555308	1.00[EUR][1000 genomes]
rs73555311	1.00[EUR][1000 genomes]
rs73555346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557117	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557152	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557160	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557174	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948421	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804577	1.00[EUR][1000 genomes]
rs9804666	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1040345	chr11:107824764-107924309	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107881000-107904000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:107881000-107904800	Weak transcription	Placenta	Placenta
3	chr11:107881600-107896200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:107881600-107904600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:107882200-107894800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:107882200-107896200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:107882200-107896600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:107882200-107904800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:107882200-107904800	Weak transcription	Fetal Intestine Large	intestine
10	chr11:107882200-107907800	Weak transcription	Fetal Kidney	kidney
11	chr11:107882200-107908000	Weak transcription	A549	lung
12	chr11:107882200-107917000	Weak transcription	NH-A	brain
13	chr11:107882600-107906200	Weak transcription	Fetal Intestine Small	intestine
14	chr11:107883000-107896000	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:107883400-107896000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:107883600-107893400	Weak transcription	Right Ventricle	heart
17	chr11:107884000-107896200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:107884200-107896000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:107884200-107904800	Weak transcription	HUVEC	blood vessel
20	chr11:107884400-107895600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:107884400-107895600	Weak transcription	Fetal Lung	lung
22	chr11:107884400-107926200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:107884400-107942000	Weak transcription	Esophagus	oesophagus
24	chr11:107884600-107896200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:107884600-107901600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:107884600-107905000	Weak transcription	Brain Germinal Matrix	brain
27	chr11:107884800-107929200	Weak transcription	NHEK	skin
28	chr11:107885000-107904000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:107885000-107904200	Weak transcription	HSMM	muscle
30	chr11:107885200-107894600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:107885200-107895600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:107885200-107896400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:107885200-107904200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:107885200-107904600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:107885200-107904800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:107885200-107906200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:107885400-107904600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr11:107885600-107893400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:107886400-107896800	Weak transcription	Dnd41	blood
40	chr11:107886800-107904000	Weak transcription	Fetal Brain Female	brain
41	chr11:107887200-107904800	Weak transcription	Thymus	Thymus
42	chr11:107887400-107895800	Weak transcription	Adipose Nuclei	Adipose
43	chr11:107887600-107895800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:107887600-107896200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:107887600-107896200	Weak transcription	Pancreas	Pancrea
46	chr11:107887600-107896400	Weak transcription	Right Atrium	heart
47	chr11:107887600-107896400	Weak transcription	Spleen	Spleen
48	chr11:107887600-107902400	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr11:107887800-107896200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:107888000-107903600	Weak transcription	Monocytes-CD14+_RO01746	blood

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