Variant report

Variant	rs73557152
Chromosome Location	chr11:107948558-107948559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107941606..107944460-chr11:107947880..107950715,2	K562	blood:
2	chr11:107948010..107950209-chr11:107992337..107994045,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255467	Chromatin interaction
ENSG00000075239	Chromatin interaction
ENSG00000166266	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4987943	1.00[EUR][1000 genomes]
rs7106586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114631	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555346	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555364	1.00[AMR][1000 genomes]
rs73555373	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555376	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555378	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73557192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73561600	1.00[EUR][1000 genomes]
rs7948421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
4	chr11:107896600-107962000	Weak transcription	Right Ventricle	heart
5	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:107903600-107957600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:107908200-107964000	Weak transcription	Fetal Heart	heart
8	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:107914800-107955800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:107926200-107950200	Weak transcription	HMEC	breast
12	chr11:107927000-107950400	Weak transcription	Colonic Mucosa	Colon
13	chr11:107928200-107953600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:107928200-107962000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
16	chr11:107928400-107950200	Weak transcription	Fetal Brain Male	brain
17	chr11:107928400-107950400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:107933200-107950400	Weak transcription	Brain Substantia Nigra	brain
19	chr11:107935200-107957600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:107935600-107954400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:107935800-107955800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:107937800-107953000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:107938400-107968200	Weak transcription	Hela-S3	cervix
24	chr11:107940600-107951400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:107940600-107956000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:107941000-107954800	Weak transcription	Stomach Mucosa	stomach
27	chr11:107941000-107971800	Weak transcription	NHEK	skin
28	chr11:107941200-107950200	Weak transcription	A549	lung
29	chr11:107941200-107950200	Weak transcription	NHDF-Ad	bronchial
30	chr11:107941200-107955400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:107941400-107950400	Weak transcription	NHLF	lung
32	chr11:107941400-107953000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:107941400-107957000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:107941600-107948800	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr11:107941600-107953000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:107941600-107955800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:107942000-107954800	Strong transcription	Fetal Intestine Small	intestine
38	chr11:107942000-107955200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:107942000-107955800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:107942000-107955800	Strong transcription	Adipose Nuclei	Adipose
41	chr11:107942000-107955800	Strong transcription	Placenta	Placenta
42	chr11:107942000-107955800	Strong transcription	Fetal Thymus	thymus
43	chr11:107942000-107956000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:107942000-107956000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:107942200-107948600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:107942200-107955600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:107942600-107953000	Weak transcription	Gastric	stomach
48	chr11:107943000-107948600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr11:107943000-107950400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:107943000-107952400	Weak transcription	Esophagus	oesophagus

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