Variant report

Variant	rs73556079
Chromosome Location	chr6:140017746-140017747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73556097	0.83[AFR][1000 genomes]
rs73557452	0.86[AFR][1000 genomes]
rs73558035	1.00[AFR][1000 genomes]
rs73568272	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140015800-140019800	Weak transcription	Liver	Liver
2	chr6:140017000-140017800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:140017000-140018000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:140017000-140019800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:140017200-140019600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:140017400-140018000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:140017600-140018600	Active TSS	Primary monocytes fromperipheralblood	blood
8	chr6:140017600-140018600	Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:140017600-140020000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links