Variant report

Variant	rs73558035
Chromosome Location	chr6:140054222-140054223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140041943..140044127-chr6:140052942..140055529,2	K562	blood:
2	chr6:140054084..140056154-chr6:140058869..140060766,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58097054	1.00[AMR][1000 genomes]
rs58355175	1.00[AMR][1000 genomes]
rs59604738	1.00[AMR][1000 genomes]
rs73556079	1.00[AFR][1000 genomes]
rs73556081	1.00[AMR][1000 genomes]
rs73556097	0.83[AFR][1000 genomes]
rs73557452	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558057	1.00[AMR][1000 genomes]
rs73563257	1.00[AMR][1000 genomes]
rs73564275	1.00[AMR][1000 genomes]
rs73564278	1.00[AMR][1000 genomes]
rs73564279	1.00[AMR][1000 genomes]
rs73568272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140053000-140054600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:140053000-140055000	Enhancers	HMEC	breast
3	chr6:140053200-140054400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:140053200-140054400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:140053200-140054600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:140053200-140054800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:140053200-140055000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:140053200-140055000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:140053200-140055000	Enhancers	HUVEC	blood vessel
10	chr6:140053400-140054400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:140053400-140054400	Enhancers	Osteobl	bone
12	chr6:140053400-140054800	Enhancers	NHEK	skin
13	chr6:140053600-140054400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:140053600-140054400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:140053600-140054400	Enhancers	HSMM	muscle
16	chr6:140053600-140054400	Enhancers	NHDF-Ad	bronchial
17	chr6:140053600-140054800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:140053600-140055000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:140053600-140055000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:140054000-140054400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:140054000-140054400	Enhancers	Psoas Muscle	Psoas
22	chr6:140054000-140054800	Enhancers	Esophagus	oesophagus
23	chr6:140054000-140055000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:140054000-140055000	Enhancers	Ovary	ovary
25	chr6:140054200-140058000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:140054200-140059600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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