Variant report

Variant	rs73558057
Chromosome Location	chr6:140065619-140065620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58097054	1.00[AMR][1000 genomes]
rs58355175	1.00[AMR][1000 genomes]
rs59604738	1.00[AMR][1000 genomes]
rs73556081	1.00[AMR][1000 genomes]
rs73557452	1.00[AMR][1000 genomes]
rs73558035	1.00[AMR][1000 genomes]
rs73563257	1.00[AMR][1000 genomes]
rs73564275	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73564278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73564279	1.00[AMR][1000 genomes]
rs73564280	1.00[AFR][1000 genomes]
rs73568272	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140062800-140065800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140063400-140066600	Enhancers	NHDF-Ad	bronchial
4	chr6:140063600-140066200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140063600-140067200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:140063800-140066000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:140063800-140066000	Enhancers	HSMM	muscle
8	chr6:140063800-140066400	Enhancers	NHLF	lung
9	chr6:140063800-140069000	Weak transcription	Fetal Heart	heart
10	chr6:140064000-140065800	Enhancers	NH-A	brain
11	chr6:140064000-140065800	Enhancers	Osteobl	bone
12	chr6:140064000-140066600	Enhancers	HUVEC	blood vessel
13	chr6:140064200-140066200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:140064200-140066400	Enhancers	Fetal Kidney	kidney
15	chr6:140064200-140066600	Enhancers	Fetal Intestine Small	intestine
16	chr6:140064200-140068400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:140064400-140066200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:140064400-140066600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:140064400-140070000	Enhancers	Fetal Intestine Large	intestine
20	chr6:140064800-140069200	Weak transcription	HSMMtube	muscle
21	chr6:140065400-140065800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:140065400-140065800	Enhancers	Adipose Nuclei	Adipose
23	chr6:140065400-140066400	Enhancers	A549	lung
24	chr6:140065400-140068200	Weak transcription	Ovary	ovary
25	chr6:140065400-140068200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:140065400-140069200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:140065400-140069400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:140065400-140069400	Weak transcription	Hela-S3	cervix
29	chr6:140065400-140069600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr6:140065400-140071800	Weak transcription	HepG2	liver
31	chr6:140065600-140066400	Enhancers	Colon Smooth Muscle	Colon
32	chr6:140065600-140069600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:140065600-140069800	Weak transcription	NHEK	skin

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