Variant report

Variant	rs73564278
Chromosome Location	chr6:140070189-140070190
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140069467..140071933-chr6:140072771..140075457,2	MCF-7	breast:
2	chr6:139695575..139697248-chr6:140068689..140071855,3	MCF-7	breast:
3	chr6:139694011..139696064-chr6:140069948..140072058,2	K562	blood:
4	chr6:140062822..140064897-chr6:140067790..140070616,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58097054	1.00[AMR][1000 genomes]
rs58355175	1.00[AMR][1000 genomes]
rs59604738	1.00[AMR][1000 genomes]
rs73556081	1.00[AMR][1000 genomes]
rs73557452	1.00[AMR][1000 genomes]
rs73558035	1.00[AMR][1000 genomes]
rs73558057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73563257	1.00[AMR][1000 genomes]
rs73564275	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73564279	1.00[AMR][1000 genomes]
rs73564280	1.00[AFR][1000 genomes]
rs73568272	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140065400-140071800	Weak transcription	HepG2	liver
3	chr6:140066000-140073400	Weak transcription	HSMM	muscle
4	chr6:140066200-140072800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:140066400-140072200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:140066400-140074800	Weak transcription	A549	lung
7	chr6:140066600-140071800	Weak transcription	NHDF-Ad	bronchial
8	chr6:140066800-140073400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:140067800-140070400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:140067800-140070600	Enhancers	Fetal Intestine Small	intestine
11	chr6:140068200-140070200	Enhancers	Ovary	ovary
12	chr6:140068200-140070800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr6:140068400-140070200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:140068400-140070200	Enhancers	Placenta	Placenta
15	chr6:140068400-140070200	Enhancers	Right Atrium	heart
16	chr6:140068800-140070400	Enhancers	Adipose Nuclei	Adipose
17	chr6:140069000-140070200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:140069000-140070200	Enhancers	Fetal Lung	lung
19	chr6:140069000-140071000	Enhancers	Fetal Heart	heart
20	chr6:140069200-140070200	Enhancers	HSMMtube	muscle
21	chr6:140069200-140070200	Enhancers	Osteobl	bone
22	chr6:140069200-140070400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:140069200-140070400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:140069200-140075800	Weak transcription	Pancreas	Pancrea
25	chr6:140069400-140070200	Enhancers	Hela-S3	cervix
26	chr6:140069400-140070600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:140069400-140070600	Enhancers	K562	blood
28	chr6:140069600-140070200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:140069600-140070400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:140069600-140070600	Enhancers	Duodenum Mucosa	Duodenum
31	chr6:140069800-140070200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:140069800-140070200	Enhancers	Liver	Liver
33	chr6:140069800-140070200	Enhancers	Fetal Kidney	kidney
34	chr6:140069800-140070200	Enhancers	NHEK	skin
35	chr6:140069800-140070600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:140070000-140070200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:140070000-140070200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:140070000-140071800	Weak transcription	Fetal Intestine Large	intestine
39	chr6:140070000-140072200	Weak transcription	NH-A	brain
40	chr6:140070000-140073400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links