Variant report

Variant	rs58097054
Chromosome Location	chr6:140160478-140160479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs58355175	1.00[AMR][1000 genomes]
rs58997234	1.00[AMR][1000 genomes]
rs59604738	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556081	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557452	1.00[AMR][1000 genomes]
rs73558035	1.00[AMR][1000 genomes]
rs73558057	1.00[AMR][1000 genomes]
rs73563257	1.00[AMR][1000 genomes]
rs73564275	1.00[AMR][1000 genomes]
rs73564278	1.00[AMR][1000 genomes]
rs73564279	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73568272	1.00[AMR][1000 genomes]
rs73569533	1.00[AMR][1000 genomes]
rs73569540	1.00[AMR][1000 genomes]
rs73569544	1.00[AMR][1000 genomes]
rs73569565	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140142200-140160800	Weak transcription	Aorta	Aorta
2	chr6:140151000-140161400	Weak transcription	Left Ventricle	heart
3	chr6:140156000-140160600	Weak transcription	Liver	Liver
4	chr6:140159400-140160600	Weak transcription	K562	blood
5	chr6:140160000-140160800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:140160200-140160800	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:140160200-140161000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:140160200-140161400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:140160200-140161800	Enhancers	Placenta	Placenta
10	chr6:140160200-140163600	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:140160400-140160600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:140160400-140160600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:140160400-140160800	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:140160400-140164000	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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