Variant report

Variant	rs58997234
Chromosome Location	chr6:140311917-140311918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694720..139698116-chr6:140311547..140315457,4	MCF-7	breast:
2	chr6:140261744..140263602-chr6:140311555..140314319,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57924822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58097054	1.00[AMR][1000 genomes]
rs58355175	1.00[AMR][1000 genomes]
rs73557452	1.00[AMR][1000 genomes]
rs73563257	1.00[AMR][1000 genomes]
rs73569533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140304200-140312000	Weak transcription	Fetal Brain Male	brain
2	chr6:140305600-140317200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:140305800-140312000	Weak transcription	HSMM	muscle
4	chr6:140305800-140312200	Weak transcription	Ovary	ovary
5	chr6:140305800-140312200	Weak transcription	HSMMtube	muscle
6	chr6:140306200-140312400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:140309600-140312200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:140310800-140312200	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr6:140311000-140312200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:140311000-140312600	Enhancers	Fetal Intestine Large	intestine
11	chr6:140311000-140312800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:140311200-140312000	Enhancers	Adipose Nuclei	Adipose
13	chr6:140311200-140312000	Weak transcription	Fetal Kidney	kidney
14	chr6:140311200-140312000	Weak transcription	NHDF-Ad	bronchial
15	chr6:140311200-140312200	Enhancers	Osteobl	bone
16	chr6:140311200-140312800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:140311200-140312800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:140311200-140312800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:140311200-140312800	Enhancers	Fetal Lung	lung
20	chr6:140311200-140312800	Enhancers	Rectal Smooth Muscle	rectum
21	chr6:140311400-140312800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:140311400-140312800	Enhancers	Colon Smooth Muscle	Colon
23	chr6:140311400-140312800	Enhancers	NHLF	lung
24	chr6:140311600-140312200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:140311600-140312200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:140311600-140313200	Enhancers	Fetal Heart	heart
27	chr6:140311600-140313800	Weak transcription	Placenta	Placenta
28	chr6:140311800-140312000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:140311800-140312800	Enhancers	Muscle Satellite Cultured Cells	--

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