Variant report

Variant	rs73569544
Chromosome Location	chr6:140298685-140298686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693777..139697007-chr6:140297471..140300569,5	MCF-7	breast:
2	chr6:140297195..140299311-chr6:140303038..140305448,2	K562	blood:
3	chr6:139695460..139697236-chr6:140298539..140301196,4	K562	blood:
4	chr6:140259128..140260901-chr6:140296853..140299455,2	MCF-7	breast:
5	chr6:139693589..139696606-chr6:140296332..140298975,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HECA-3	chr6:140298266-140299576	NONHSAT115266

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57924822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58097054	1.00[AMR][1000 genomes]
rs58355175	1.00[AMR][1000 genomes]
rs58997234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557452	1.00[AMR][1000 genomes]
rs73563257	1.00[AMR][1000 genomes]
rs73568272	1.00[AMR][1000 genomes]
rs73569533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140287800-140299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:140294200-140299400	Enhancers	Fetal Heart	heart
5	chr6:140295200-140299000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:140295200-140303000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:140295400-140298800	Weak transcription	HSMMtube	muscle
8	chr6:140295400-140300400	Weak transcription	Fetal Kidney	kidney
9	chr6:140295400-140300400	Weak transcription	Fetal Stomach	stomach
10	chr6:140295400-140300400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:140295400-140301800	Weak transcription	Aorta	Aorta
12	chr6:140295400-140302000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:140295400-140302800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:140295400-140303000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:140295600-140298800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:140295600-140299000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:140295600-140302000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:140295600-140302600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:140295600-140303400	Weak transcription	Right Atrium	heart
20	chr6:140295800-140298800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:140295800-140298800	Weak transcription	NH-A	brain
22	chr6:140295800-140299000	Weak transcription	HUVEC	blood vessel
23	chr6:140295800-140299000	Weak transcription	K562	blood
24	chr6:140296400-140298800	Weak transcription	Osteobl	bone
25	chr6:140296400-140302600	Weak transcription	Fetal Lung	lung
26	chr6:140297000-140299000	Enhancers	Placenta	Placenta
27	chr6:140297000-140299600	Enhancers	NHDF-Ad	bronchial
28	chr6:140297000-140301800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:140297200-140298800	Weak transcription	NHLF	lung
30	chr6:140297200-140299400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:140297400-140305800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:140298000-140299400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:140298200-140299400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:140298200-140299400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:140298200-140300600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:140298200-140300600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:140298200-140300600	Weak transcription	Left Ventricle	heart
38	chr6:140298200-140303000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:140298200-140303000	Weak transcription	Pancreas	Pancrea
40	chr6:140298200-140305600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:140298200-140306200	Enhancers	Hela-S3	cervix
42	chr6:140298400-140298800	Weak transcription	Ovary	ovary
43	chr6:140298400-140299600	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr6:140298400-140300800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr6:140298600-140299200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr6:140298600-140299400	Enhancers	HMEC	breast
47	chr6:140298600-140299600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:140298600-140299600	Enhancers	A549	lung
49	chr6:140298600-140299600	Enhancers	HSMM	muscle
50	chr6:140298600-140299600	Enhancers	NHEK	skin

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