Variant report

Variant	rs73569533
Chromosome Location	chr6:140294193-140294194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139696942..139698780-chr6:140294038..140296688,2	K562	blood:
2	chr6:140289417..140292711-chr6:140293441..140296166,4	K562	blood:
3	chr6:140281644..140284069-chr6:140292281..140294292,2	K562	blood:
4	chr6:140289780..140291502-chr6:140292596..140295071,2	K562	blood:
5	chr6:140291815..140294274-chr6:140303049..140305531,2	K562	blood:
6	chr6:140285910..140289430-chr6:140290980..140294749,5	K562	blood:
7	chr6:140281089..140284069-chr6:140290932..140294292,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57924822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58097054	1.00[AMR][1000 genomes]
rs58355175	1.00[AMR][1000 genomes]
rs58997234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73557452	1.00[AMR][1000 genomes]
rs73563257	1.00[AMR][1000 genomes]
rs73568272	1.00[AMR][1000 genomes]
rs73569540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140287800-140299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:140289200-140294400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:140289400-140294800	Weak transcription	HUVEC	blood vessel
4	chr6:140289600-140297200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:140291000-140294800	Weak transcription	K562	blood
6	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:140292200-140294600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:140292200-140294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:140292200-140294800	Weak transcription	NH-A	brain
10	chr6:140292400-140294200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:140292400-140294400	Weak transcription	Osteobl	bone
12	chr6:140292600-140294800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:140292600-140294800	Weak transcription	NHDF-Ad	bronchial
14	chr6:140292600-140295000	Weak transcription	HSMM	muscle
15	chr6:140292600-140297000	Weak transcription	Placenta	Placenta
16	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:140292800-140295200	Weak transcription	Adipose Nuclei	Adipose
18	chr6:140293600-140294600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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