Variant report

Variant	rs73557862
Chromosome Location	chr19:40193891-40193892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:40193890-40193940	ECC-1	luminal epithelium:	n/a
2	chr19:40193890-40193940	PrEC	prostate:	n/a
3	chr19:40193890-40193940	H1-hESC	embryonic stem cell:	embryo
4	chr19:40193890-40193940	HRE	kidney:	n/a
5	chr19:40193890-40193940	SK-N-MC	brain:	n/a
6	chr19:40193890-40193940	CMK	blood:	n/a
7	chr19:40193890-40193940	AG04450	lung:	fetal
8	chr19:40193890-40193940	GM06990	blood:	n/a
9	chr19:40193890-40193940	HL-60	blood:	n/a
10	chr19:40193890-40193940	AG09319	gingival:	n/a
11	chr19:40193890-40193940	HCF	heart:	n/a
12	chr19:40193890-40193940	SK-N-SH_RA	brain:	n/a
13	chr19:40193890-40193940	AG04449	skin:	fetal
14	chr19:40193890-40193940	NT2-D1	testis:	n/a
15	chr19:40193890-40193940	HPAEpiC	pulmonary alveolar:	n/a
16	chr19:40193890-40193940	SKMC	muscle:	n/a
17	chr19:40193890-40193940	HCPEpiC	choroid plexus:	n/a
18	chr19:40193890-40193940	ovcar-3	ovarian:	n/a
19	chr19:40193890-40193940	MCF-7	breast:	n/a
20	chr19:40193890-40193940	HEK293	kidney:	embryo
21	chr19:40193890-40193940	PANC-1	pancreas:	n/a
22	chr19:40193890-40193940	GM19239	blood:	n/a
23	chr19:40193890-40193940	AG10803	skin:	n/a
24	chr19:40193890-40193940	Hela-S3	cervix:	n/a
25	chr19:40193890-40193940	A549	lung:	n/a
26	chr19:40193890-40193940	BE2_C	brain:	n/a
27	chr19:40193890-40193940	RPTEC	kidney:	n/a
28	chr19:40193890-40193940	SK-N-SH	brain:	n/a
29	chr19:40193890-40193940	HRPEpiC	eye:	n/a
30	chr19:40193890-40193940	IMR90	lung:	fetal
31	chr19:40193890-40193940	SAEC	small airway:	n/a
32	chr19:40193890-40193940	GM12892	blood:	n/a
33	chr19:40193890-40193940	BJ	skin:	n/a
34	chr19:40193890-40193940	HEEpiC	esophagus:	n/a
35	chr19:40193890-40193940	T-47D	breast:	n/a
36	chr19:40193890-40193940	U87	brain:	n/a
37	chr19:40193890-40193940	GM12878	blood:	n/a
38	chr19:40193890-40193940	HNPCEpiC	eye:	n/a
39	chr19:40193890-40193940	PFSK-1	brain:	n/a
40	chr19:40193890-40193940	MCF10A-Er-Src	breast:	n/a
41	chr19:40193890-40193940	AoSMC	blood vessel:	n/a
42	chr19:40193890-40193940	HMEC	breast:	n/a
43	chr19:40193890-40193940	K562	blood:	n/a
44	chr19:40193890-40193940	NH-A	brain:	n/a
45	chr19:40193890-40193940	HepG2	liver:	n/a
46	chr19:40193890-40193940	HUVEC	blood vessel:	n/a
47	chr19:40193890-40193940	AG09309	skin:	n/a
48	chr19:40193890-40193940	GM12891	blood:	n/a
49	chr19:40193890-40193940	HCM	heart:	n/a
50	chr19:40193890-40193940	LNCaP	prostate:	n/a

No data

Variant related genes	Relation type
LGALS14	CpG island

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10402453	1.00[ASN][1000 genomes]
rs10415800	1.00[ASN][1000 genomes]
rs10416515	1.00[ASN][1000 genomes]
rs16973571	1.00[ASN][1000 genomes]
rs16973572	1.00[ASN][1000 genomes]
rs56960663	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57205516	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57758462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58988184	1.00[ASN][1000 genomes]
rs59155776	1.00[ASN][1000 genomes]
rs59747400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60628785	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60676487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61346225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61737337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73557829	1.00[ASN][1000 genomes]
rs73557849	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73557858	1.00[AFR][1000 genomes]
rs73557894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73559714	1.00[AMR][1000 genomes]
rs73559726	1.00[AMR][1000 genomes]
rs8104205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8107384	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057361	chr19:40123868-40310996	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1061361	chr19:40131820-40310996	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv579511	chr19:40132825-40310497	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1062394	chr19:40133229-40310186	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv544004	chr19:40133229-40310186	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3397881	chr19:40150495-40199437	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1059691	chr19:40168862-40306373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv544005	chr19:40168862-40306373	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv3332670	chr19:40181720-40297955	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40193400-40195000	Weak transcription	Placenta	Placenta
2	chr19:40193400-40195600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:40193800-40194000	Flanking Active TSS	GM12878-XiMat	blood

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