Variant report

Variant	rs7355825
Chromosome Location	chr3:139635793-139635794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139629796..139634163-chr3:139634352..139637618,5	MCF-7	breast:
2	chr3:139616121..139618234-chr3:139635024..139637186,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1365152	0.81[GIH][hapmap]
rs17397077	1.00[CEU][hapmap]
rs2009192	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2114167	0.81[GIH][hapmap]
rs2350274	0.81[GIH][hapmap]
rs35220837	0.93[AMR][1000 genomes]
rs56196502	0.93[AMR][1000 genomes]
rs67271705	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71314532	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7356017	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7615793	0.81[GIH][hapmap]
rs980337	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9809477	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9813092	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9813297	0.81[GIH][hapmap]
rs9821898	1.00[CEU][hapmap]
rs9824300	1.00[CEU][hapmap]
rs9824570	0.81[GIH][hapmap]
rs9824931	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9835329	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs9860322	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9870579	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139631600-139635800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:139635000-139635800	Enhancers	Fetal Kidney	kidney

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