Variant report

Variant	rs9824931
Chromosome Location	chr3:139659995-139659996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1365152	0.81[GIH][hapmap]
rs17397077	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2009192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2114167	0.81[GIH][hapmap]
rs2350274	0.81[GIH][hapmap]
rs35018094	0.92[EUR][1000 genomes]
rs35220837	0.93[AMR][1000 genomes]
rs56196502	0.93[AMR][1000 genomes]
rs67271705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71314532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355825	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7356017	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7615793	0.81[GIH][hapmap]
rs980337	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9809477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9813092	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9813297	0.81[GIH][hapmap]
rs9821898	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9824300	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9824570	0.81[GIH][hapmap]
rs9835329	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs9860322	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9870579	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877544	chr3:139642572-139688415	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139655600-139660400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:139656600-139661200	Enhancers	Ovary	ovary
3	chr3:139657000-139660600	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:139658400-139660200	Enhancers	HepG2	liver
5	chr3:139658400-139660600	Enhancers	Adipose Nuclei	Adipose
6	chr3:139658600-139660200	Enhancers	Psoas Muscle	Psoas
7	chr3:139658600-139661000	Enhancers	Liver	Liver
8	chr3:139658800-139660600	Strong transcription	HSMMtube	muscle
9	chr3:139659000-139660000	Weak transcription	Left Ventricle	heart
10	chr3:139659000-139660000	Weak transcription	Right Atrium	heart
11	chr3:139659000-139662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:139659600-139660200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:139659600-139660400	Enhancers	Skeletal Muscle Female	skeletal muscle

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