Variant report

Variant	rs73558538
Chromosome Location	chr19:44334402-44334403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16976816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16976817	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61634267	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73558560	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73563529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44332000-44336800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:44332000-44339200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:44332000-44344400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:44332200-44335400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr19:44332200-44335400	Weak transcription	Left Ventricle	heart
6	chr19:44332200-44336600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr19:44332200-44336800	Weak transcription	Esophagus	oesophagus
8	chr19:44332200-44338400	ZNF genes & repeats	A549	lung
9	chr19:44332200-44340400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr19:44332200-44341000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr19:44332400-44334600	Weak transcription	Fetal Kidney	kidney
12	chr19:44332400-44335200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr19:44332400-44335400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:44332400-44335400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:44332400-44335400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr19:44332400-44335600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr19:44332400-44336000	Weak transcription	Colon Smooth Muscle	Colon
18	chr19:44332400-44336200	Weak transcription	Colonic Mucosa	Colon
19	chr19:44332400-44336400	Weak transcription	Brain Angular Gyrus	brain
20	chr19:44332400-44336400	Weak transcription	Right Ventricle	heart
21	chr19:44332400-44336400	Weak transcription	HUVEC	blood vessel
22	chr19:44332400-44336600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr19:44332400-44336600	Weak transcription	Fetal Brain Male	brain
24	chr19:44332400-44336600	Weak transcription	GM12878-XiMat	blood
25	chr19:44332400-44337200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr19:44332400-44338000	Weak transcription	Primary B cells from cord blood	blood
27	chr19:44332400-44339200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr19:44332400-44339200	Weak transcription	Fetal Heart	heart
29	chr19:44332400-44339200	Weak transcription	Fetal Thymus	thymus
30	chr19:44332400-44339200	Weak transcription	NHLF	lung
31	chr19:44332400-44339400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr19:44332400-44339600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr19:44332400-44341000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr19:44332400-44343400	Weak transcription	Stomach Mucosa	stomach
35	chr19:44332600-44335200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr19:44332600-44336400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr19:44332600-44336800	Strong transcription	Fetal Lung	lung
38	chr19:44332600-44337400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr19:44332600-44337800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:44332600-44337800	Strong transcription	Fetal Muscle Leg	muscle
41	chr19:44332600-44338000	Weak transcription	K562	blood
42	chr19:44332600-44339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr19:44332600-44339200	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr19:44332600-44339200	Strong transcription	Osteobl	bone
45	chr19:44332600-44339400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr19:44332600-44340400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr19:44332600-44341000	Weak transcription	Hela-S3	cervix
48	chr19:44332600-44342400	Strong transcription	Placenta	Placenta
49	chr19:44332800-44334600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr19:44332800-44334600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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