Variant report

Variant	rs73560202
Chromosome Location	chr19:51888957-51888958
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000267905	Chromatin interaction
ENSG00000105379	Chromatin interaction
ENSG00000160318	Chromatin interaction
ENSG00000269403	Chromatin interaction
ENSG00000268520	Chromatin interaction
ENSG00000186806	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2741239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73560200	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73562108	1.00[AMR][1000 genomes]
rs73562110	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51872000-51897000	Weak transcription	Right Atrium	heart
2	chr19:51880000-51890200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr19:51885000-51890200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr19:51885400-51890400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr19:51887800-51889400	Enhancers	K562	blood
6	chr19:51887800-51893400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr19:51888400-51889400	Enhancers	HepG2	liver
8	chr19:51888600-51890200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr19:51888800-51889000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:51888800-51889000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr19:51888800-51889200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr19:51888800-51889200	Enhancers	GM12878-XiMat	blood
13	chr19:51888800-51890200	Enhancers	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links