Variant report

Variant	rs73562108
Chromosome Location	chr19:51891076-51891077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000160318	Chromatin interaction
ENSG00000268520	Chromatin interaction
ENSG00000269403	Chromatin interaction
ENSG00000105379	Chromatin interaction
ENSG00000268889	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2741239	1.00[AMR][1000 genomes]
rs73560200	1.00[AMR][1000 genomes]
rs73560202	1.00[AMR][1000 genomes]
rs73562110	1.00[AMR][1000 genomes]
rs73562113	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51872000-51897000	Weak transcription	Right Atrium	heart
2	chr19:51887800-51893400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr19:51889200-51893600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr19:51889200-51893800	Weak transcription	GM12878-XiMat	blood
5	chr19:51889200-51897000	Weak transcription	Spleen	Spleen
6	chr19:51889400-51893000	Weak transcription	K562	blood
7	chr19:51890200-51891200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr19:51890200-51891800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr19:51890200-51892600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:51890200-51893000	Flanking Active TSS	HepG2	liver
11	chr19:51890200-51893200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr19:51890400-51891800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
13	chr19:51890400-51892000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:51890600-51891200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:51890600-51891800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:51890800-51891600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr19:51890800-51892400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr19:51891000-51894400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr19:51891000-51897000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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