Variant report

Variant	rs73561097
Chromosome Location	chr13:87783178-87783179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:87776715..87778744-chr13:87780725..87783361,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs3963903	0.85[AMR][1000 genomes]
rs4511400	0.85[AMR][1000 genomes]
rs4553471	0.85[AMR][1000 genomes]
rs4575405	0.85[AMR][1000 genomes]
rs55758789	1.00[AMR][1000 genomes]
rs55811630	1.00[AMR][1000 genomes]
rs56036938	1.00[AMR][1000 genomes]
rs56702454	1.00[AMR][1000 genomes]
rs56708308	0.83[AMR][1000 genomes]
rs56814755	1.00[AMR][1000 genomes]
rs56858752	1.00[AMR][1000 genomes]
rs56970807	1.00[AMR][1000 genomes]
rs57019306	1.00[AMR][1000 genomes]
rs57289088	1.00[AMR][1000 genomes]
rs57704092	0.85[AMR][1000 genomes]
rs57871348	1.00[AMR][1000 genomes]
rs58107726	0.83[AMR][1000 genomes]
rs58436419	1.00[AMR][1000 genomes]
rs58514415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58833676	1.00[AMR][1000 genomes]
rs59046442	0.85[AMR][1000 genomes]
rs59092487	0.85[AMR][1000 genomes]
rs59102208	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59699555	1.00[AMR][1000 genomes]
rs59925877	0.85[AMR][1000 genomes]
rs60065293	1.00[AMR][1000 genomes]
rs60314271	0.85[AMR][1000 genomes]
rs60475582	1.00[AMR][1000 genomes]
rs60632788	1.00[AMR][1000 genomes]
rs60967936	1.00[AMR][1000 genomes]
rs61001114	1.00[AMR][1000 genomes]
rs61607055	1.00[AMR][1000 genomes]
rs61613775	1.00[AMR][1000 genomes]
rs61711434	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558873	1.00[AMR][1000 genomes]
rs73558881	1.00[AMR][1000 genomes]
rs73558888	1.00[AMR][1000 genomes]
rs73558889	1.00[AMR][1000 genomes]
rs73558892	1.00[AMR][1000 genomes]
rs73558894	1.00[AMR][1000 genomes]
rs73558897	1.00[AMR][1000 genomes]
rs73560614	1.00[AMR][1000 genomes]
rs73560615	1.00[AMR][1000 genomes]
rs73560618	1.00[AMR][1000 genomes]
rs73560626	1.00[AMR][1000 genomes]
rs73560628	1.00[AMR][1000 genomes]
rs73560690	1.00[AMR][1000 genomes]
rs73560692	1.00[AMR][1000 genomes]
rs73560695	1.00[AMR][1000 genomes]
rs73560696	0.85[AMR][1000 genomes]
rs73560700	0.85[AMR][1000 genomes]
rs73561058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561060	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561063	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561064	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561074	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561089	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73562405	0.85[AMR][1000 genomes]
rs73562409	0.85[AMR][1000 genomes]
rs73562411	0.85[AMR][1000 genomes]
rs73562418	0.85[AMR][1000 genomes]
rs73562421	0.85[AMR][1000 genomes]
rs73562428	0.85[AMR][1000 genomes]
rs73563113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565477	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73565483	1.00[AMR][1000 genomes]
rs73565494	0.85[AMR][1000 genomes]
rs73565498	0.85[AMR][1000 genomes]
rs73566070	1.00[AMR][1000 genomes]
rs73566071	0.85[AMR][1000 genomes]
rs73566074	1.00[AMR][1000 genomes]
rs73566083	1.00[AMR][1000 genomes]
rs73566089	0.85[AMR][1000 genomes]
rs73566091	1.00[AMR][1000 genomes]
rs73566093	0.85[AMR][1000 genomes]
rs73566098	1.00[AMR][1000 genomes]
rs73566100	1.00[AMR][1000 genomes]
rs73567606	1.00[AMR][1000 genomes]
rs74103265	1.00[AMR][1000 genomes]
rs74103273	1.00[AMR][1000 genomes]
rs74103280	1.00[AMR][1000 genomes]
rs74103287	1.00[AMR][1000 genomes]
rs74103289	1.00[AMR][1000 genomes]
rs74103291	1.00[AMR][1000 genomes]
rs74103350	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs74103357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103376	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037473	chr13:87760891-87805163	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562628	chr13:87766113-87800578	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87777200-87784000	Weak transcription	HSMMtube	muscle
2	chr13:87780200-87784600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:87781600-87784600	Enhancers	Fetal Heart	heart
4	chr13:87782200-87783200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:87782400-87783400	Weak transcription	NH-A	brain
6	chr13:87782400-87784000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:87782400-87787000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr13:87783000-87783800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:87783000-87783800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:87783000-87784000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:87783000-87784000	Weak transcription	Brain Germinal Matrix	brain

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