Variant report

Variant	rs73569105
Chromosome Location	chr20:1505304-1505305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:1503830..1506372-chr20:1510373..1512056,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11905059	1.00[AMR][1000 genomes]
rs11906372	1.00[AMR][1000 genomes]
rs11906465	1.00[AMR][1000 genomes]
rs11906544	1.00[AMR][1000 genomes]
rs11906723	1.00[AMR][1000 genomes]
rs11907473	1.00[AMR][1000 genomes]
rs11907712	1.00[AMR][1000 genomes]
rs11907751	1.00[AMR][1000 genomes]
rs11907783	1.00[AMR][1000 genomes]
rs11907998	1.00[AMR][1000 genomes]
rs11908171	1.00[AMR][1000 genomes]
rs11908182	1.00[AMR][1000 genomes]
rs12106160	1.00[AMR][1000 genomes]
rs56754323	1.00[AMR][1000 genomes]
rs57346343	1.00[AMR][1000 genomes]
rs57420503	1.00[AMR][1000 genomes]
rs58097778	1.00[AMR][1000 genomes]
rs58116184	1.00[AMR][1000 genomes]
rs58308789	1.00[AMR][1000 genomes]
rs58367945	1.00[AMR][1000 genomes]
rs58517500	1.00[AMR][1000 genomes]
rs59506879	1.00[AMR][1000 genomes]
rs60385016	1.00[AMR][1000 genomes]
rs60811618	1.00[AMR][1000 genomes]
rs61002307	1.00[AMR][1000 genomes]
rs61215418	1.00[AMR][1000 genomes]
rs61511268	1.00[AMR][1000 genomes]
rs61733947	1.00[AMR][1000 genomes]
rs73569103	1.00[AMR][1000 genomes]
rs73569106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569112	1.00[AMR][1000 genomes]
rs73569121	1.00[AMR][1000 genomes]
rs73569122	1.00[AMR][1000 genomes]
rs73569123	1.00[AMR][1000 genomes]
rs73569127	1.00[AMR][1000 genomes]
rs73569150	1.00[AMR][1000 genomes]
rs73569154	1.00[AMR][1000 genomes]
rs73569167	1.00[AMR][1000 genomes]
rs73569168	1.00[AMR][1000 genomes]
rs73569169	1.00[AMR][1000 genomes]
rs73569172	1.00[AMR][1000 genomes]
rs73569173	1.00[AMR][1000 genomes]
rs73569175	1.00[AMR][1000 genomes]
rs73569178	1.00[AMR][1000 genomes]
rs73569180	1.00[AMR][1000 genomes]
rs73569183	1.00[AMR][1000 genomes]
rs73569192	1.00[AMR][1000 genomes]
rs73569194	1.00[AMR][1000 genomes]
rs73569196	1.00[AMR][1000 genomes]
rs73569198	1.00[AMR][1000 genomes]
rs73570807	1.00[AMR][1000 genomes]
rs73570817	1.00[AMR][1000 genomes]
rs73570821	1.00[AMR][1000 genomes]
rs73570823	1.00[AMR][1000 genomes]
rs73570825	1.00[AMR][1000 genomes]
rs73570828	1.00[AMR][1000 genomes]
rs73570829	1.00[AMR][1000 genomes]
rs73570830	1.00[AMR][1000 genomes]
rs73570832	1.00[AMR][1000 genomes]
rs73570834	1.00[AMR][1000 genomes]
rs73570841	1.00[AMR][1000 genomes]
rs73570844	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522008	chr20:1340390-1638578	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv833893	chr20:1414615-1527779	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv2758509	chr20:1476781-1679256	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv2758777	chr20:1476781-1679256	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv428374	chr20:1476781-1679256	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv912596	chr20:1486637-1877150	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv1057036	chr20:1493425-1869281	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv912597	chr20:1500506-1877150	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1502400-1505800	Weak transcription	Spleen	Spleen
2	chr20:1503400-1506200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr20:1503600-1506200	Enhancers	Primary hematopoietic stem cells	blood
4	chr20:1503600-1506200	Enhancers	Dnd41	blood
5	chr20:1504000-1506000	Enhancers	Primary B cells from cord blood	blood
6	chr20:1504400-1506200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr20:1504600-1505800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr20:1505000-1505400	Enhancers	GM12878-XiMat	blood
9	chr20:1505200-1506200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr20:1505200-1506400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:1505200-1507800	Weak transcription	Primary B cells from peripheral blood	blood

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