Variant report

Variant	rs73569122
Chromosome Location	chr20:1514554-1514555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11905059	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11906372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11906465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11906544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11906723	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11907473	1.00[AMR][1000 genomes]
rs11907712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11907751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11907783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11907998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11908171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11908182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12106160	1.00[AMR][1000 genomes]
rs56754323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57346343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58097778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58116184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58308789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58367945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58517500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59506879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60385016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60811618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61002307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61215418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733947	1.00[AMR][1000 genomes]
rs73569103	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569105	1.00[AMR][1000 genomes]
rs73569106	1.00[AMR][1000 genomes]
rs73569112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569127	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569150	1.00[AMR][1000 genomes]
rs73569154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569198	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73570844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522008	chr20:1340390-1638578	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv833893	chr20:1414615-1527779	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv2758509	chr20:1476781-1679256	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv2758777	chr20:1476781-1679256	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv428374	chr20:1476781-1679256	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv912596	chr20:1486637-1877150	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
8	nsv1057036	chr20:1493425-1869281	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
9	nsv912597	chr20:1500506-1877150	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
10	nsv510779	chr20:1509330-1613962	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1508000-1515200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr20:1513800-1514800	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr20:1513800-1516400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr20:1513800-1517200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr20:1514000-1514600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr20:1514000-1519000	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links