Variant report

Variant	rs7357405
Chromosome Location	chr8:79020700-79020701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10095647	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10106856	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1383837	0.96[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1481512	0.96[CEU][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1481513	0.83[EUR][1000 genomes]
rs1842629	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1842630	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6473088	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982500	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6988252	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6989455	0.90[EUR][1000 genomes]
rs9650262	0.96[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526123	chr8:79008608-79046492	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv525612	chr8:79008608-79046695	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79020400-79020800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr8:79020400-79021600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:79020600-79020800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:79020600-79021400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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