Variant report

Variant	rs9650262
Chromosome Location	chr8:79064053-79064054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10095615	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10095647	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10106856	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1383837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430828	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1469552	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1481512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1835479	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1842629	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842630	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195689	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4495416	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62518492	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6473088	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6982500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6988252	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6989455	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6989498	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6996348	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7357405	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7837628	0.88[ASN][1000 genomes]
rs7838969	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831364	chr8:79034769-79223319	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:79063200-79066400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr8:79063200-79067200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:79063400-79067200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:79063400-79067200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:79063600-79065200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:79063600-79065200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:79063600-79067200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:79063800-79064200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:79064000-79064400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr8:79064000-79064600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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