Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:147408861..147411040-chr6:147429825..147431994,2	MCF-7	breast:
2	chr6:147430213..147433528-chr6:147478461..147482182,3	K562	blood:
3	chr6:147424959..147428934-chr6:147429472..147432018,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196634	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1574218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58300191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58350636	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs58638848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59728921	0.84[ASN][1000 genomes]
rs6902096	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6908011	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6915106	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6917200	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6925324	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6938554	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6939884	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73576361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73588107	0.84[ASN][1000 genomes]
rs73590023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73590053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73590056	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9485149	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9497697	0.94[ASN][1000 genomes]
rs9497713	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv522096	chr6:147424880-147443480	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv5524	chr6:147428436-147454371	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147428000-147430800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr6:147428000-147431000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:147428000-147431000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:147428000-147431800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr6:147428600-147431000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:147429400-147430800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:147429400-147431600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:147429400-147433000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:147429600-147431400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr6:147429800-147431400	Enhancers	Fetal Thymus	thymus
11	chr6:147430000-147431400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:147430000-147431800	Enhancers	Thymus	Thymus
13	chr6:147430600-147431000	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr6:147430600-147431000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr6:147430600-147431000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr6:147430600-147431200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:147430600-147431400	Enhancers	Dnd41	blood

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