Variant report

Variant	rs9485149
Chromosome Location	chr6:147472828-147472829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1529012	0.86[JPT][hapmap]
rs1574218	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58300191	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6902096	0.87[EUR][1000 genomes]
rs6908011	0.87[EUR][1000 genomes]
rs6915106	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6925324	0.80[ASN][1000 genomes]
rs6939884	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73574490	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73576361	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73590053	0.80[ASN][1000 genomes]
rs73590056	0.80[ASN][1000 genomes]
rs9322091	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs9322093	1.00[JPT][hapmap]
rs9497697	0.80[ASN][1000 genomes]
rs9497707	1.00[JPT][hapmap]
rs9497713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497715	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147464200-147475200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:147464200-147475400	Weak transcription	HSMM	muscle
3	chr6:147469800-147473400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:147471600-147475000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:147471800-147473000	Enhancers	Fetal Intestine Large	intestine
6	chr6:147472200-147473000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr6:147472600-147475800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:147472800-147474000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links