Variant report

Variant	rs1529012
Chromosome Location	chr6:147450639-147450640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147431206..147434248-chr6:147448632..147451102,3	K562	blood:
2	chr6:147449104..147452134-chr6:147521705..147524376,3	K562	blood:
3	chr6:147450226..147452733-chr6:147453592..147455134,2	MCF-7	breast:
4	chr6:147450043..147452990-chr6:147474130..147476017,2	K562	blood:

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1113883	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12661753	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12664201	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12664682	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12664716	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17076610	0.82[CHB][hapmap]
rs2165423	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2328805	0.80[EUR][1000 genomes]
rs58134586	0.84[ASN][1000 genomes]
rs58922329	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59578647	0.81[ASN][1000 genomes]
rs61443164	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6902219	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6904708	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6909582	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs6913549	0.84[ASN][1000 genomes]
rs6915603	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6917323	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920262	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6920520	0.84[ASN][1000 genomes]
rs6924985	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6925187	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6925633	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6929579	0.84[ASN][1000 genomes]
rs73588127	0.81[ASN][1000 genomes]
rs73588137	0.84[ASN][1000 genomes]
rs73588149	0.84[ASN][1000 genomes]
rs73590029	0.81[ASN][1000 genomes]
rs7764355	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9322091	0.86[JPT][hapmap]
rs9322092	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322093	1.00[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485142	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9485144	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9485147	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485149	0.86[JPT][hapmap]
rs9497695	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497696	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497707	1.00[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497709	1.00[CEU][hapmap]
rs9497710	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9497715	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9791310	0.84[ASN][1000 genomes]
rs9791311	0.84[ASN][1000 genomes]
rs9885771	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv5524	chr6:147428436-147454371	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147434800-147462800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:147447800-147456800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:147448000-147452800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:147448200-147452800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:147448200-147453000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:147448800-147452800	Weak transcription	K562	blood
7	chr6:147449000-147450800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:147449000-147453800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:147449200-147462800	Weak transcription	Osteobl	bone
10	chr6:147449400-147452600	Weak transcription	Muscle Satellite Cultured Cells	--

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