Variant report

Variant	rs17076610
Chromosome Location	chr6:147373564-147373565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147371586..147374372-chr6:147376075..147380479,4	K562	blood:
2	chr6:147371586..147374760-chr6:147376075..147378911,4	K562	blood:
3	chr6:147373013..147375111-chr6:147523682..147525798,2	K562	blood:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10499246	0.85[EUR][1000 genomes]
rs1113883	0.89[ASN][1000 genomes]
rs11967383	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969474	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111514	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661078	0.86[ASN][1000 genomes]
rs12661753	0.89[ASN][1000 genomes]
rs12664201	0.89[ASN][1000 genomes]
rs12664682	0.89[ASN][1000 genomes]
rs12664716	0.89[ASN][1000 genomes]
rs1529012	0.82[CHB][hapmap]
rs17076589	0.94[ASN][1000 genomes]
rs17238835	0.85[EUR][1000 genomes]
rs58134586	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58922329	0.87[ASN][1000 genomes]
rs59578647	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61443164	0.87[ASN][1000 genomes]
rs6904708	0.89[ASN][1000 genomes]
rs6907758	1.00[ASN][1000 genomes]
rs6909582	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs6913549	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913672	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920520	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924581	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924985	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925187	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6925633	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6929579	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73588114	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588127	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73588137	0.93[ASN][1000 genomes]
rs73588149	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73590029	0.89[ASN][1000 genomes]
rs7764355	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7773216	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485137	0.94[ASN][1000 genomes]
rs9485142	0.89[ASN][1000 genomes]
rs9497695	0.89[ASN][1000 genomes]
rs9497696	0.89[ASN][1000 genomes]
rs9497707	0.82[CHB][hapmap]
rs9791310	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9791311	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9885771	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147365600-147374600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:147372800-147375400	Weak transcription	Psoas Muscle	Psoas
3	chr6:147373200-147375600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:147373200-147377600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:147373400-147377400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links