Variant report

Variant	rs61443164
Chromosome Location	chr6:147428279-147428280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:147232453..147234855-chr6:147426627..147429327,2	K562	blood:
2	chr6:147426845..147428573-chr6:147517289..147519124,2	K562	blood:
3	chr6:147427313..147429430-chr6:147435405..147437072,2	K562	blood:
4	chr6:147420322..147423479-chr6:147424445..147428438,5	K562	blood:
5	chr6:147425896..147428449-chr6:147432490..147434531,2	K562	blood:
6	chr6:147426207..147429085-chr6:147439279..147441613,3	K562	blood:
7	chr6:147424959..147428934-chr6:147429472..147432018,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1113883	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11967383	0.87[ASN][1000 genomes]
rs11969474	0.87[ASN][1000 genomes]
rs12111514	0.87[ASN][1000 genomes]
rs12661078	0.87[ASN][1000 genomes]
rs12661753	0.98[ASN][1000 genomes]
rs12664201	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12664682	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12664716	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1529012	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17076589	0.81[ASN][1000 genomes]
rs17076610	0.87[ASN][1000 genomes]
rs58134586	0.94[ASN][1000 genomes]
rs58922329	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59578647	0.90[ASN][1000 genomes]
rs6904708	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6907758	0.87[ASN][1000 genomes]
rs6909582	0.94[ASN][1000 genomes]
rs6913549	0.94[ASN][1000 genomes]
rs6913672	0.87[ASN][1000 genomes]
rs6915603	0.82[EUR][1000 genomes]
rs6916236	0.87[ASN][1000 genomes]
rs6917323	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6920520	0.94[ASN][1000 genomes]
rs6924581	0.87[ASN][1000 genomes]
rs6924985	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925187	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925633	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6929579	0.94[ASN][1000 genomes]
rs73588114	0.87[ASN][1000 genomes]
rs73588127	0.90[ASN][1000 genomes]
rs73588137	0.94[ASN][1000 genomes]
rs73588149	0.94[ASN][1000 genomes]
rs73590029	0.90[ASN][1000 genomes]
rs7764355	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7773216	0.87[ASN][1000 genomes]
rs9322092	0.82[EUR][1000 genomes]
rs9485137	0.81[ASN][1000 genomes]
rs9485142	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9485144	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9497695	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497696	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9497707	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9791310	0.94[ASN][1000 genomes]
rs9791311	0.94[ASN][1000 genomes]
rs9885771	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv522096	chr6:147424880-147443480	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147424800-147429400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:147425200-147429800	Weak transcription	Fetal Thymus	thymus
3	chr6:147425200-147430600	Weak transcription	Dnd41	blood
4	chr6:147425800-147429600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:147425800-147430000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:147427800-147428400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:147427800-147428800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:147427800-147428800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:147427800-147428800	Enhancers	NHDF-Ad	bronchial
10	chr6:147427800-147429000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:147428000-147428400	Active TSS	Brain Anterior Caudate	brain
12	chr6:147428000-147428600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:147428000-147428600	Flanking Active TSS	Osteobl	bone
14	chr6:147428000-147428800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:147428000-147428800	Enhancers	HepG2	liver
16	chr6:147428000-147429000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:147428000-147430600	Enhancers	Primary T cells from cord blood	blood
18	chr6:147428000-147430800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:147428000-147431000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:147428000-147431000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:147428000-147431800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:147428200-147428400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:147428200-147428400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:147428200-147428400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:147428200-147428400	Flanking Active TSS	Liver	Liver
26	chr6:147428200-147428400	Enhancers	NHLF	lung
27	chr6:147428200-147428600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:147428200-147428600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr6:147428200-147428600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr6:147428200-147428600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:147428200-147428600	Flanking Active TSS	K562	blood
32	chr6:147428200-147428800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:147428200-147430600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:147428200-147430600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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