Variant report

Variant	rs6915603
Chromosome Location	chr6:147452892-147452893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147450846..147453025-chr6:147455330..147456851,2	K562	blood:
2	chr6:147450043..147452990-chr6:147474130..147476017,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1113883	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1529012	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2165423	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328805	0.90[EUR][1000 genomes]
rs58922329	0.82[EUR][1000 genomes]
rs61443164	0.82[EUR][1000 genomes]
rs6902219	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6904708	0.82[EUR][1000 genomes]
rs6917323	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6920262	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925633	0.80[AMR][1000 genomes]
rs7764355	0.84[AMR][1000 genomes]
rs9322092	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9322093	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9485144	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9485147	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497707	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9497709	1.00[CEU][hapmap]
rs9497710	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497715	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv5524	chr6:147428436-147454371	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147434800-147462800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:147447800-147456800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:147448200-147453000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:147449000-147453800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:147449200-147462800	Weak transcription	Osteobl	bone
6	chr6:147450800-147453200	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr6:147452000-147453200	Active TSS	Brain Angular Gyrus	brain
8	chr6:147452400-147453800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:147452600-147453000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:147452600-147453200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:147452800-147453200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:147452800-147453200	Flanking Active TSS	Brain Anterior Caudate	brain
13	chr6:147452800-147453400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:147452800-147453400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:147452800-147454000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:147452800-147454200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:147452800-147454200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:147452800-147454400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:147452800-147454400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:147452800-147455200	Enhancers	K562	blood

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