Variant report

Variant	rs6902219
Chromosome Location	chr6:147463370-147463371
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1529012	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2165423	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328805	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6915603	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6917323	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6920262	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73578389	0.85[AMR][1000 genomes]
rs9322092	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485144	0.86[ASN][1000 genomes]
rs9485147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497707	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9497710	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9497715	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147462800-147463400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:147462800-147463400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:147462800-147463400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:147462800-147463400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:147462800-147463400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:147462800-147463400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:147462800-147463400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:147462800-147463400	Enhancers	A549	lung
9	chr6:147462800-147463400	Enhancers	HMEC	breast
10	chr6:147462800-147463400	Enhancers	K562	blood
11	chr6:147462800-147463400	Enhancers	NHDF-Ad	bronchial
12	chr6:147462800-147463400	Enhancers	NHLF	lung
13	chr6:147462800-147463600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:147462800-147463600	Enhancers	Fetal Intestine Large	intestine
15	chr6:147462800-147463600	Enhancers	Osteobl	bone
16	chr6:147463000-147465000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:147463200-147463400	Enhancers	HSMM	muscle
18	chr6:147463200-147463600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:147463200-147464400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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