Variant report

Variant	rs73578389
Chromosome Location	chr6:147480652-147480653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147478214..147481987-chr6:147524471..147526667,3	MCF-7	breast:
2	chr6:147477631..147490692-chr6:147521132..147530003,24	K562	blood:
3	chr6:147475725..147486468-chr6:147521132..147528058,22	K562	blood:
4	chr6:147207642..147209637-chr6:147480504..147482096,2	K562	blood:
5	chr6:147448469..147450107-chr6:147480618..147482536,2	K562	blood:
6	chr6:147478653..147480662-chr6:147522707..147524415,2	MCF-7	breast:
7	chr6:147234020..147237797-chr6:147479326..147483886,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12660978	1.00[ASN][1000 genomes]
rs6902219	0.85[AMR][1000 genomes]
rs73576356	0.96[ASN][1000 genomes]
rs9485147	0.85[AMR][1000 genomes]
rs9485148	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497709	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497710	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147475800-147482800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr6:147476400-147482800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:147476400-147482800	Weak transcription	NHEK	skin
4	chr6:147477600-147482000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:147478400-147482600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:147478400-147487600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:147478400-147487600	Weak transcription	HMEC	breast
8	chr6:147478400-147487600	Weak transcription	NHLF	lung
9	chr6:147478800-147482400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:147478800-147482600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:147478800-147483200	Weak transcription	Osteobl	bone
12	chr6:147479800-147481000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:147480000-147480800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:147480000-147481400	Flanking Active TSS	K562	blood
15	chr6:147480200-147481000	Weak transcription	Primary T cells from cord blood	blood
16	chr6:147480200-147481400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:147480200-147486000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links