Variant report

Variant	rs6929579
Chromosome Location	chr6:147384838-147384839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147378504..147381290-chr6:147384397..147386277,3	K562	blood:
2	chr6:147378504..147381290-chr6:147384397..147386277,2	K562	blood:
3	chr6:147383491..147386446-chr6:147390287..147393281,3	K562	blood:
4	chr6:147382391..147386290-chr6:147386680..147389719,4	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10499246	0.87[EUR][1000 genomes]
rs1113883	0.96[ASN][1000 genomes]
rs11967383	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11969474	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12111514	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12661078	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12661753	0.96[ASN][1000 genomes]
rs12664201	0.96[ASN][1000 genomes]
rs12664682	0.96[ASN][1000 genomes]
rs12664716	0.96[ASN][1000 genomes]
rs1529012	0.82[CHB][hapmap];0.80[CHD][hapmap];0.84[ASN][1000 genomes]
rs17076589	0.87[ASN][1000 genomes]
rs17076610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17238835	0.87[EUR][1000 genomes]
rs58134586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58922329	0.94[ASN][1000 genomes]
rs59578647	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61443164	0.94[ASN][1000 genomes]
rs6904708	0.96[ASN][1000 genomes]
rs6907758	0.93[ASN][1000 genomes]
rs6909582	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6913549	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913672	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6916236	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6917323	0.83[ASN][1000 genomes]
rs6920520	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924581	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924985	0.96[ASN][1000 genomes]
rs6925187	0.96[ASN][1000 genomes]
rs6925633	0.96[ASN][1000 genomes]
rs73588114	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73588127	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73588137	1.00[ASN][1000 genomes]
rs73588149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590029	0.96[ASN][1000 genomes]
rs7764355	0.96[ASN][1000 genomes]
rs7773216	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9322091	0.86[JPT][hapmap]
rs9322093	0.86[JPT][hapmap]
rs9485137	0.87[ASN][1000 genomes]
rs9485142	0.96[ASN][1000 genomes]
rs9485144	0.84[ASN][1000 genomes]
rs9485149	0.86[JPT][hapmap]
rs9497695	0.96[ASN][1000 genomes]
rs9497696	0.96[ASN][1000 genomes]
rs9497707	0.82[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs9497715	0.86[JPT][hapmap]
rs9791310	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791311	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885771	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv823856	chr6:147384260-147393263	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147377400-147385000	Weak transcription	Pancreas	Pancrea
2	chr6:147382800-147386800	Weak transcription	Stomach Mucosa	stomach
3	chr6:147384200-147385600	Enhancers	Osteobl	bone
4	chr6:147384400-147385000	Enhancers	HepG2	liver
5	chr6:147384400-147385200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:147384400-147385200	Enhancers	K562	blood
7	chr6:147384400-147385400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:147384400-147385400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:147384400-147385400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:147384400-147385400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:147384400-147385400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:147384400-147385400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:147384400-147385400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:147384400-147385400	Enhancers	HSMM	muscle
15	chr6:147384400-147385400	Enhancers	NH-A	brain
16	chr6:147384400-147385400	Enhancers	NHEK	skin
17	chr6:147384400-147385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:147384400-147385600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:147384400-147385600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:147384400-147385600	Enhancers	HMEC	breast
21	chr6:147384400-147385600	Enhancers	NHLF	lung
22	chr6:147384600-147385000	Flanking Active TSS	NHDF-Ad	bronchial
23	chr6:147384600-147385200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:147384600-147385400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:147384600-147385400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:147384600-147385400	Enhancers	A549	lung
27	chr6:147384600-147385400	Enhancers	Hela-S3	cervix
28	chr6:147384600-147385400	Enhancers	HSMMtube	muscle
29	chr6:147384800-147385200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:147384800-147385200	Enhancers	Placenta Amnion	Placenta Amnion

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